Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AL023583.1-201ENST00000607518 1143 ntBASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 AL356094.1-201ENST00000624663 1212 ntBASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 AC140134.1-201ENST00000511830 3544 ntBASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 AC005005.4-201ENST00000623789 16698 ntBASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 AP000473.2-201ENST00000602659 1537 ntBASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP54Q7Z3B4 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
NUP54Q7Z3B4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
NUP54Q7Z3B4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.21□□□□□ -1.57
NUP54Q7Z3B4 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
NUP54Q7Z3B4 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.57
NUP54Q7Z3B4 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC090971.4-201ENST00000560291 1800 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 RNA5SP131-201ENST00000365452 119 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 RNA5SP30-201ENST00000365552 115 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 SNORA17A-201ENST00000391185 133 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 GAPDHP42-201ENST00000406848 981 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 SNORA11.3-201ENST00000408471 128 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 RNA5SP178-201ENST00000410380 128 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AL354868.1-201ENST00000417077 482 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 FAR1P1-201ENST00000427163 934 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 SUMO2P3-201ENST00000438311 288 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC092013.1-201ENST00000438795 332 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 EIF4A1P11-201ENST00000451239 222 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC021146.7-201ENST00000509604 775 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 OR8K2P-201ENST00000524645 927 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC139697.1-201ENST00000548429 745 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AL049872.1-201ENST00000556323 322 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 MIR4311-201ENST00000580794 100 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 MIR4505-201ENST00000582238 73 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 MIMT1-201ENST00000597105 1050 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC126175.1-201ENST00000617041 758 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 SNORA11.6-201ENST00000619030 128 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC007683.2-201ENST00000624681 714 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 SNORA17.5-201ENST00000630429 132 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 AC119674.1-212ENST00000641155 993 ntBASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP54Q7Z3B4 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 RNA5SP435-201ENST00000364044 108 ntBASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 MIR421-201ENST00000365696 85 ntBASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 RN7SKP222-201ENST00000410651 315 ntBASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 AC211486.3-201ENST00000412694 621 ntBASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 RPS6P23-201ENST00000413224 722 ntBASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NUP54Q7Z3B4 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms