Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC027088.4-201ENST00000611559 1947 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AL451142.1-201ENST00000375867 775 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.13□□□□□ -1.43
USP39Q53GS9 NPM1P37-201ENST00000403105 874 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 UBE2V1P14-201ENST00000415815 558 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 MTCO1P21-201ENST00000416634 589 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 TRGV6-201ENST00000417928 299 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 RPS17P17-201ENST00000419392 409 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 RPL34P3-201ENST00000421454 338 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AL606495.1-201ENST00000422100 813 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 BX510359.3-201ENST00000422168 306 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC118469.1-201ENST00000442943 488 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 GAPDHP23-201ENST00000444823 993 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 ZNF619P1-201ENST00000446539 752 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AL022237.1-201ENST00000446663 358 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AL445466.1-201ENST00000448432 357 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC092967.1-201ENST00000449016 481 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 TPT1P1-201ENST00000458495 518 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.13□□□□□ -1.43
USP39Q53GS9 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 OR9N1P-201ENST00000491296 333 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC091860.1-201ENST00000505723 432 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC113420.1-201ENST00000507903 571 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC002456.2-201ENST00000509356 380 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC092865.1-201ENST00000544395 1023 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC084824.1-201ENST00000550917 1005 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC024909.2-201ENST00000553035 286 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AP002802.2-201ENST00000605877 235 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC067838.1-201ENST00000606064 577 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC239868.4-201ENST00000608318 671 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AL360219.1-201ENST00000610230 366 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC104073.3-201ENST00000610942 955 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AL645927.2-201ENST00000618350 349 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AP005431.1-201ENST00000618479 319 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC093875.1-201ENST00000623688 504 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AL603839.4-201ENST00000624658 1005 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC084035.1-201ENST00000634543 607 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 METTL8-218ENST00000638989 876 ntTSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 METTL8-219ENST00000640734 726 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC116667.2-201ENST00000641075 823 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC009501.3-201ENST00000605001 1352 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 AC099786.3-201ENST00000565735 1410 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AC027279.1-201ENST00000568885 4284 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 OR13C1P-202ENST00000641378 2919 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 ZNF101P1-201ENST00000435701 1720 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP39Q53GS9 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.13□□□□□ -1.43
USP39Q53GS9 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.13□□□□□ -1.43
USP39Q53GS9 GNL2P1-201ENST00000451274 2190 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 NAMPTP1-201ENST00000440465 2514 ntBASIC6.13□□□□□ -1.43
USP39Q53GS9 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP39Q53GS9 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
USP39Q53GS9 OR11H13P-201ENST00000359695 979 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 MIR375-201ENST00000362103 64 ntBASIC6.12□□□□□ -1.43
USP39Q53GS9 RNU1-150P-201ENST00000362491 162 ntBASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms