Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC016590.3-201ENST00000611171 753 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC4.86□□□□□ -1.63
FOXA1P55317 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.86□□□□□ -1.63
FOXA1P55317 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
FOXA1P55317 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.86□□□□□ -1.63
FOXA1P55317 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.86□□□□□ -1.63
FOXA1P55317 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.86□□□□□ -1.63
FOXA1P55317 AC097063.1-201ENST00000426714 1797 ntBASIC4.86□□□□□ -1.63
FOXA1P55317 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.86□□□□□ -1.63
FOXA1P55317 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
FOXA1P55317 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
FOXA1P55317 AC005261.2-201ENST00000593427 4258 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
FOXA1P55317 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
FOXA1P55317 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
FOXA1P55317 SNORA70.10-201ENST00000384515 134 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 DUTP5-201ENST00000406790 469 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.85□□□□□ -1.63
FOXA1P55317 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 NPM1P25-201ENST00000429734 854 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 CFL1P1-202ENST00000432948 411 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.85□□□□□ -1.63
FOXA1P55317 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.85□□□□□ -1.63
FOXA1P55317 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.85□□□□□ -1.63
FOXA1P55317 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.85□□□□□ -1.63
FOXA1P55317 RN7SL799P-201ENST00000475891 298 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 AC010350.1-201ENST00000504908 231 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.85□□□□□ -1.63
FOXA1P55317 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.85□□□□□ -1.63
FOXA1P55317 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
FOXA1P55317 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.85□□□□□ -1.63
FOXA1P55317 AC027026.1-201ENST00000532323 742 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC4.85□□□□□ -1.63
FOXA1P55317 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
FOXA1P55317 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.85□□□□□ -1.63
FOXA1P55317 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
FOXA1P55317 SMARCE1P3-201ENST00000553649 1231 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 AL049830.4-201ENST00000555149 351 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC4.85□□□□□ -1.63
FOXA1P55317 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.85□□□□□ -1.63
FOXA1P55317 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.85□□□□□ -1.63
FOXA1P55317 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC4.85□□□□□ -1.63
FOXA1P55317 AC026124.2-201ENST00000621847 656 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
FOXA1P55317 KARSP1-201ENST00000451871 1752 ntBASIC4.85□□□□□ -1.63
FOXA1P55317 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
FOXA1P55317 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.85□□□□□ -1.63
FOXA1P55317 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
FOXA1P55317 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.85□□□□□ -1.63
FOXA1P55317 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
FOXA1P55317 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.85□□□□□ -1.63
FOXA1P55317 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
FOXA1P55317 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
FOXA1P55317 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.84□□□□□ -1.63
FOXA1P55317 AC068870.3-201ENST00000625077 2536 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
FOXA1P55317 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.84□□□□□ -1.63
FOXA1P55317 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
FOXA1P55317 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
FOXA1P55317 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.84□□□□□ -1.63
FOXA1P55317 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
FOXA1P55317 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
FOXA1P55317 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.84□□□□□ -1.63
FOXA1P55317 ATP5HP3-201ENST00000396994 486 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 AL121878.1-201ENST00000418638 859 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 REREP1Y-201ENST00000422655 198 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 OR52B5P-201ENST00000435337 951 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 REREP2Y-201ENST00000439103 200 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 AC245047.2-201ENST00000441060 530 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 TCEA1P1-201ENST00000449716 880 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 AC092647.2-201ENST00000452998 253 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.84□□□□□ -1.63
FOXA1P55317 AC090686.1-201ENST00000481577 749 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.84□□□□□ -1.63
FOXA1P55317 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC4.84□□□□□ -1.63
FOXA1P55317 BNIP3P1-201ENST00000547295 580 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 OR11J2P-201ENST00000555298 907 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.84□□□□□ -1.63
FOXA1P55317 CYCSP40-201ENST00000575927 294 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.84□□□□□ -1.63
FOXA1P55317 MIR6862-1-201ENST00000613016 70 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 MIR6862-2-201ENST00000614755 70 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 AC015660.5-201ENST00000623238 564 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 OR52B5P-202ENST00000641118 1110 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 CASC19-264ENST00000641912 1184 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.84□□□□□ -1.63
FOXA1P55317 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
FOXA1P55317 SALL4P2-201ENST00000423288 2910 ntBASIC4.84□□□□□ -1.63
FOXA1P55317 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.84□□□□□ -1.63
FOXA1P55317 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
FOXA1P55317 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.64
FOXA1P55317 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 AC009643.2-201ENST00000603543 1448 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
FOXA1P55317 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.83□□□□□ -1.64
FOXA1P55317 AL672167.1-205ENST00000641112 3080 ntBASIC4.83□□□□□ -1.64
FOXA1P55317 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
FOXA1P55317 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms