Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 AP001960.1-201ENST00000506494 658 ntBASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 AC244107.2-201ENST00000611773 76 ntBASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 CASC19-255ENST00000641733 1385 ntBASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 U3.28-201ENST00000391249 210 ntBASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 CCNB1IP1P2-201ENST00000432876 818 ntBASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 AC008676.3-201ENST00000521237 435 ntBASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 AL158152.1-201ENST00000602652 1435 ntBASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 IRF5P1-201ENST00000504852 2164 ntBASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC9.93□□□□□ -0.82
SHROOM4Q9ULL8 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 RPL10P10-201ENST00000403509 664 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 RN7SKP27-201ENST00000410684 333 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 CNOT7P1-201ENST00000429006 852 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 RPL34P20-201ENST00000442771 351 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 AC006967.1-201ENST00000467608 589 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 AC093827.1-201ENST00000480094 861 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 RPL23AP72-201ENST00000492447 435 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 RN7SKP248-201ENST00000516278 305 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 SS18L2P2-201ENST00000583960 235 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 AC103792.1-201ENST00000603591 919 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 CDY11P-201ENST00000447168 1651 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 MFSD8-242ENST00000641690 4199 ntBASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SHROOM4Q9ULL8 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 FHIT-201ENST00000341848 174 ntTSL 3 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 RNA5SP332-201ENST00000391063 115 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AC073465.2-201ENST00000440938 498 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 BNIP3P5-201ENST00000562290 498 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 SNORA35B-201ENST00000607417 129 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AC091932.2-201ENST00000623014 291 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AC099654.6-201ENST00000636487 512 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AC005261.2-201ENST00000593427 4258 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AL132640.2-201ENST00000559968 1698 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 RNA5SP479-201ENST00000364858 117 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 RPS4XP16-201ENST00000427198 791 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AC093414.1-201ENST00000434712 514 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 TRIM60P9Y-201ENST00000438459 816 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 TRIM60P11Y-201ENST00000445313 801 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 RN7SL188P-201ENST00000469842 285 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 OOSP1P2-201ENST00000579644 351 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AP001357.1-201ENST00000586304 1053 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 AC006338.2-201ENST00000616864 791 ntBASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
SHROOM4Q9ULL8 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 214.9 ms