Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC136777.2-201ENST00000522979 358 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 AP003396.4-201ENST00000527574 265 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS4BO75351 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS4BO75351 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.86□□□□□ -1.47
VPS4BO75351 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS4BO75351 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS4BO75351 AC007346.2-201ENST00000564816 892 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS4BO75351 AC007346.1-201ENST00000569208 867 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS4BO75351 AC245036.5-201ENST00000596330 847 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 AC008751.2-201ENST00000597885 980 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 AC025857.2-201ENST00000602711 238 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS4BO75351 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS4BO75351 AC011330.2-201ENST00000621680 635 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 AC104985.3-201ENST00000623479 597 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 RPL23AP61-201ENST00000623642 466 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 AC092159.4-201ENST00000624944 550 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS4BO75351 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
VPS4BO75351 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
VPS4BO75351 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS4BO75351 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS4BO75351 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS4BO75351 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS4BO75351 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS4BO75351 AL121839.2-201ENST00000565058 6943 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS4BO75351 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS4BO75351 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS4BO75351 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS4BO75351 AC239868.2-201ENST00000564237 4527 ntBASIC5.86□□□□□ -1.47
VPS4BO75351 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS4BO75351 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS4BO75351 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS4BO75351 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
VPS4BO75351 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
VPS4BO75351 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
VPS4BO75351 AC092451.3-201ENST00000625067 1343 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS4BO75351 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 RNA5SP375-201ENST00000362975 119 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VPS4BO75351 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS4BO75351 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS4BO75351 SNORA51.9-201ENST00000384295 124 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 RNY3P9-201ENST00000384727 106 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 MTCO2P31-201ENST00000402702 684 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 CBX1P3-201ENST00000413296 527 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 LIPT1P1-201ENST00000415870 1186 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS4BO75351 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS4BO75351 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.85□□□□□ -1.47
VPS4BO75351 RPS15AP30-201ENST00000420976 390 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 OR5W1P-201ENST00000423705 938 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS4BO75351 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.85□□□□□ -1.47
VPS4BO75351 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
VPS4BO75351 MTCYBP29-201ENST00000436327 1006 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 AC000041.1-201ENST00000439655 175 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 SNRPFP2-201ENST00000440710 251 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS4BO75351 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS4BO75351 ACA64.4-201ENST00000459070 127 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS4BO75351 MTCO3P35-201ENST00000485582 781 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 AC134050.1-201ENST00000495088 933 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS4BO75351 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS4BO75351 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS4BO75351 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 NPM1P21-201ENST00000513394 762 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS4BO75351 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS4BO75351 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS4BO75351 AC091515.1-201ENST00000548110 679 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 OR4U1P-201ENST00000554958 912 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 AC007225.2-201ENST00000562529 256 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS4BO75351 AC060780.2-201ENST00000589047 198 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS4BO75351 GAS5-AS1-201ENST00000602767 694 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 DUXAP3-201ENST00000603616 594 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 RMST_10.1-201ENST00000616309 154 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 U6.48-201ENST00000618523 106 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 AC004232.3-201ENST00000622977 525 ntBASIC5.85□□□□□ -1.47
VPS4BO75351 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS4BO75351 AL049767.1-202ENST00000637826 242 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms