Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.95□□□□□ -1.62
SDC1P18827 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 AC007342.9-201ENST00000623877 1385 ntBASIC4.95□□□□□ -1.62
SDC1P18827 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SDC1P18827 U3.3-201ENST00000362986 216 ntBASIC4.95□□□□□ -1.62
SDC1P18827 RNA5SP90-201ENST00000364801 99 ntBASIC4.95□□□□□ -1.62
SDC1P18827 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 OR8V1P-201ENST00000395193 873 ntBASIC4.95□□□□□ -1.62
SDC1P18827 U3.32-201ENST00000408116 212 ntBASIC4.95□□□□□ -1.62
SDC1P18827 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.95□□□□□ -1.62
SDC1P18827 AL133325.1-201ENST00000421090 382 ntBASIC4.95□□□□□ -1.62
SDC1P18827 AC009238.2-201ENST00000431026 355 ntBASIC4.95□□□□□ -1.62
SDC1P18827 NPM1P19-201ENST00000450070 712 ntBASIC4.95□□□□□ -1.62
SDC1P18827 AC104849.1-201ENST00000462623 405 ntBASIC4.95□□□□□ -1.62
SDC1P18827 AL133445.1-201ENST00000467051 452 ntBASIC4.95□□□□□ -1.62
SDC1P18827 RPL7P6-201ENST00000480903 738 ntBASIC4.95□□□□□ -1.62
SDC1P18827 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC4.95□□□□□ -1.62
SDC1P18827 FTH1P11-201ENST00000517577 551 ntBASIC4.95□□□□□ -1.62
SDC1P18827 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC4.95□□□□□ -1.62
SDC1P18827 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.95□□□□□ -1.62
SDC1P18827 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.95□□□□□ -1.62
SDC1P18827 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.95□□□□□ -1.62
SDC1P18827 AP005131.7-201ENST00000610087 611 ntBASIC4.95□□□□□ -1.62
SDC1P18827 AC107905.1-201ENST00000616204 426 ntBASIC4.95□□□□□ -1.62
SDC1P18827 AC126175.1-201ENST00000617041 758 ntBASIC4.95□□□□□ -1.62
SDC1P18827 CYP4F35P-202ENST00000636121 390 ntBASIC4.95□□□□□ -1.62
SDC1P18827 AC074101.1-201ENST00000637861 241 ntBASIC4.95□□□□□ -1.62
SDC1P18827 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.95□□□□□ -1.62
SDC1P18827 AC100778.3-201ENST00000580060 1750 ntBASIC4.95□□□□□ -1.62
SDC1P18827 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC4.95□□□□□ -1.62
SDC1P18827 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 AP005432.1-201ENST00000580891 3485 ntBASIC4.95□□□□□ -1.62
SDC1P18827 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.95□□□□□ -1.62
SDC1P18827 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SDC1P18827 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SDC1P18827 AC097063.1-201ENST00000426714 1797 ntBASIC4.94□□□□□ -1.62
SDC1P18827 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SDC1P18827 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC4.94□□□□□ -1.62
SDC1P18827 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SDC1P18827 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SDC1P18827 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SDC1P18827 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SDC1P18827 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SDC1P18827 AC240504.1-201ENST00000395709 845 ntBASIC4.94□□□□□ -1.62
SDC1P18827 AL035079.1-201ENST00000405210 287 ntBASIC4.94□□□□□ -1.62
SDC1P18827 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.94□□□□□ -1.62
SDC1P18827 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.94□□□□□ -1.62
SDC1P18827 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.94□□□□□ -1.62
SDC1P18827 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.94□□□□□ -1.62
SDC1P18827 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.94□□□□□ -1.62
SDC1P18827 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC4.94□□□□□ -1.62
SDC1P18827 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC4.94□□□□□ -1.62
SDC1P18827 RPL7AP61-201ENST00000443410 636 ntBASIC4.94□□□□□ -1.62
SDC1P18827 RPS26P41-201ENST00000450370 284 ntBASIC4.94□□□□□ -1.62
SDC1P18827 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.94□□□□□ -1.62
SDC1P18827 PPIAP19-201ENST00000486414 492 ntBASIC4.94□□□□□ -1.62
SDC1P18827 AC005412.2-201ENST00000492004 341 ntBASIC4.94□□□□□ -1.62
SDC1P18827 AC138409.2-202ENST00000507274 458 ntBASIC4.94□□□□□ -1.62
SDC1P18827 B4GALNT2P1-201ENST00000508857 307 ntBASIC4.94□□□□□ -1.62
SDC1P18827 AC011270.1-201ENST00000558606 583 ntBASIC4.94□□□□□ -1.62
SDC1P18827 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.94□□□□□ -1.62
SDC1P18827 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC4.94□□□□□ -1.62
SDC1P18827 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC4.94□□□□□ -1.62
SDC1P18827 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC4.94□□□□□ -1.62
SDC1P18827 AC018695.5-201ENST00000605872 315 ntBASIC4.94□□□□□ -1.62
SDC1P18827 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.94□□□□□ -1.62
SDC1P18827 REV3L-214ENST00000619481 969 ntTSL 5 BASIC4.94□□□□□ -1.62
SDC1P18827 AC073869.10-201ENST00000642016 354 ntBASIC4.94□□□□□ -1.62
SDC1P18827 SAMMSON-227ENST00000642114 1199 ntBASIC4.94□□□□□ -1.62
SDC1P18827 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SDC1P18827 CUL4AP1-201ENST00000514750 1863 ntBASIC4.94□□□□□ -1.62
SDC1P18827 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SDC1P18827 AC063976.2-201ENST00000425667 3556 ntBASIC4.94□□□□□ -1.62
SDC1P18827 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SDC1P18827 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.94□□□□□ -1.62
SDC1P18827 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.94□□□□□ -1.62
SDC1P18827 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.93□□□□□ -1.62
SDC1P18827 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 THAP12P8-201ENST00000447914 2115 ntBASIC4.93□□□□□ -1.62
SDC1P18827 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.93□□□□□ -1.62
SDC1P18827 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
SDC1P18827 MIR1282-201ENST00000408865 101 ntBASIC4.93□□□□□ -1.62
SDC1P18827 RN7SKP293-201ENST00000411389 296 ntBASIC4.93□□□□□ -1.62
SDC1P18827 RFESDP1-201ENST00000422350 461 ntBASIC4.93□□□□□ -1.62
SDC1P18827 AC104333.2-201ENST00000422630 192 ntBASIC4.93□□□□□ -1.62
SDC1P18827 EI24P4-201ENST00000423683 1078 ntBASIC4.93□□□□□ -1.62
SDC1P18827 FAM96AP1-201ENST00000430879 482 ntBASIC4.93□□□□□ -1.62
SDC1P18827 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.93□□□□□ -1.62
SDC1P18827 AL138899.2-201ENST00000439139 499 ntBASIC4.93□□□□□ -1.62
SDC1P18827 RPS29P10-201ENST00000439197 166 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms