Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 GTF2IP2-201ENST00000424290 697 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AL590399.2-201ENST00000427536 309 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 TOPORSLP1-201ENST00000467693 2102 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AP002981.1-201ENST00000517692 975 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AC008147.3-201ENST00000548666 354 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AC091042.1-201ENST00000579213 173 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AC015660.5-201ENST00000623238 564 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 MTCO1P1-201ENST00000624263 1081 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 ATP5A1P1-201ENST00000454088 1321 ntBASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 U3.3-201ENST00000362986 216 ntBASIC10□□□□□ -0.81
SHROOM4Q9ULL8 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 OR7L1P-201ENST00000456181 380 ntBASIC10□□□□□ -0.81
SHROOM4Q9ULL8 AP000797.2-201ENST00000475768 606 ntBASIC10□□□□□ -0.81
SHROOM4Q9ULL8 RN7SL423P-201ENST00000486202 304 ntBASIC10□□□□□ -0.81
SHROOM4Q9ULL8 OR2A3P-201ENST00000493774 953 ntBASIC10□□□□□ -0.81
SHROOM4Q9ULL8 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 RN7SKP122-201ENST00000515923 296 ntBASIC10□□□□□ -0.81
SHROOM4Q9ULL8 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 AC084033.1-201ENST00000550830 633 ntBASIC10□□□□□ -0.81
SHROOM4Q9ULL8 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 RN7SL356P-201ENST00000582228 248 ntBASIC10□□□□□ -0.81
SHROOM4Q9ULL8 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
SHROOM4Q9ULL8 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 AL049693.1-201ENST00000402760 611 ntBASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 NPM1P36-201ENST00000415681 835 ntBASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 RPL36AP15-201ENST00000444514 266 ntBASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 RBMY2TP-201ENST00000451162 947 ntBASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 MAPK10-263ENST00000641052 4307 ntBASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 AL359715.3-201ENST00000569267 2123 ntBASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 AL132656.3-201ENST00000606384 1595 ntBASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC9.99□□□□□ -0.81
SHROOM4Q9ULL8 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 P2RY10P2-201ENST00000416730 913 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 snoU13.20-201ENST00000459180 104 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 RPL7AP28-201ENST00000464513 571 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 RN7SL354P-201ENST00000469282 294 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 RN7SKP5-201ENST00000517045 272 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 MIR3667-201ENST00000581025 74 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 MYLK-221ENST00000583087 678 ntTSL 4 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AC002044.3-201ENST00000623314 541 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AL137058.3-201ENST00000624531 3099 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AC015799.1-201ENST00000622996 3122 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms