Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 C1D-202ENST00000407324 1379 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC217777.1-201ENST00000570034 1471 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ACTA2-AS1-201ENST00000437930 2450 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC005614.1-201ENST00000598952 3653 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ZNF438-203ENST00000375311 2173 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 MIR181A1-201ENST00000385026 110 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL137058.2-203ENST00000398039 825 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL078604.1-201ENST00000404609 466 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 GLRXP1-201ENST00000423261 334 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SDCBPP2-201ENST00000424643 885 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 RBMY2JP-201ENST00000425544 1059 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 MTND3P21-201ENST00000433774 331 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 OR7E125P-201ENST00000443450 846 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 VN1R34P-201ENST00000447387 883 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL139156.3-201ENST00000454802 394 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 RPS4XP17-201ENST00000479057 754 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 RN7SL88P-201ENST00000480166 299 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC027801.3-201ENST00000515049 698 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SNORA18.6-201ENST00000516792 115 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 RN7SKP96-201ENST00000516948 297 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 SOD1P3-201ENST00000518682 454 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 RGS5-220ENST00000528689 566 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 PMS2P3-207ENST00000529061 717 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC022878.1-201ENST00000530684 149 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL389895.1-201ENST00000554127 252 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC099314.1-201ENST00000563916 562 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 MIR4433B-201ENST00000581329 102 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 MIR544B-201ENST00000582372 78 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 VN1R79P-201ENST00000593540 513 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC011487.2-201ENST00000600193 1228 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC112191.3-201ENST00000604371 277 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC090578.1-201ENST00000604955 591 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 RN7SL778P-201ENST00000607160 297 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC091304.9-201ENST00000612091 226 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 HOTTIP_2.1-201ENST00000616633 376 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AC068234.2-201ENST00000619646 522 ntBASIC5.62□□□□□ -1.51
CCDC140Q96MF4 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC5.62□□□□□ -1.51
CCDC140Q96MF4 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms