Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC022336.1-201ENST00000475510 337 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC022133.1-201ENST00000490961 571 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 RPS24P16-201ENST00000497294 392 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 IMPA1P1-201ENST00000510718 842 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 MTND6P2-201ENST00000512226 524 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC098976.1-201ENST00000513014 541 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 CCNHP1-201ENST00000513311 678 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 OR10D4P-201ENST00000525892 951 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC009852.2-201ENST00000567898 485 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC096553.1-201ENST00000605169 829 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC023813.4-201ENST00000607580 580 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC109583.2-201ENST00000617367 129 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS39Q96JC1 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS39Q96JC1 AC079298.1-201ENST00000625026 1619 ntBASIC5.41□□□□□ -1.54
VPS39Q96JC1 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS39Q96JC1 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 MAPK10-328ENST00000641553 4009 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS39Q96JC1 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 RNU4-7P-201ENST00000364758 141 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 OR1L6-202ENST00000373684 1044 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS39Q96JC1 RCC2P2-201ENST00000422174 918 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 AC090018.1-201ENST00000434369 367 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 RPS10P18-201ENST00000442662 495 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 AL589765.3-201ENST00000446084 462 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 OR52E3P-201ENST00000452083 936 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 NRBF2P4-201ENST00000520874 850 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 AC025857.1-201ENST00000525252 377 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 AL049872.1-201ENST00000556323 322 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 AL390334.1-201ENST00000556395 450 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 AC092944.2-201ENST00000605443 889 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS39Q96JC1 AL118522.2-201ENST00000616045 615 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 AC138965.3-201ENST00000623875 498 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 AC007683.2-201ENST00000624681 714 ntBASIC5.4□□□□□ -1.54
VPS39Q96JC1 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS39Q96JC1 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS39Q96JC1 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS39Q96JC1 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.4□□□□□ -1.55
VPS39Q96JC1 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS39Q96JC1 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.4□□□□□ -1.55
VPS39Q96JC1 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
VPS39Q96JC1 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 MIR365B-201ENST00000362317 111 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 RNA5SP46-201ENST00000362370 120 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 U3.7-201ENST00000363668 216 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 LYPLA1P3-201ENST00000402650 695 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC093155.2-201ENST00000420734 937 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC093084.1-201ENST00000424233 687 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 KCTD9P1-201ENST00000430462 1167 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 AL672138.1-201ENST00000450604 1015 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AL035090.1-201ENST00000454835 332 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC037198.2-201ENST00000478845 733 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 RPL5P22-201ENST00000480199 884 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 RPS12P31-201ENST00000491419 398 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AP000926.3-201ENST00000497201 299 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 snoU109.6-201ENST00000516831 118 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 SCARNA16.4-201ENST00000516956 187 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 FTH1P11-201ENST00000517577 551 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms