Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA1P49639 AL591363.1-201ENST00000450091 483 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 CEACAMP11-201ENST00000455211 583 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 RNU1-88P-201ENST00000459274 128 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AC104982.1-201ENST00000478775 574 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 PPM1AP1-201ENST00000502740 1135 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXA1P49639 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
HOXA1P49639 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 AC121161.1-201ENST00000510606 652 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 RNU5A-7P-201ENST00000515979 116 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXA1P49639 CASP1P2-201ENST00000526830 1258 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA1P49639 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXA1P49639 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA1P49639 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 AL513327.3-201ENST00000602618 469 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 RPSAP75-201ENST00000605848 301 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AL645933.2-201ENST00000606743 1207 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 AL133481.2-203ENST00000607558 139 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AC005021.1-201ENST00000608730 355 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 RFPL4AP6-201ENST00000616792 846 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AC073342.3-201ENST00000624211 193 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AC097520.1-201ENST00000624435 385 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
HOXA1P49639 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
HOXA1P49639 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 AC106754.1-201ENST00000562632 1513 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 CDC27P2-201ENST00000425026 1922 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HOXA1P49639 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HOXA1P49639 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 SNORA64.3-201ENST00000365647 134 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.76□□□□□ -1.65
HOXA1P49639 RNU6-1005P-201ENST00000384519 107 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HOXA1P49639 RNU6-796P-201ENST00000391086 107 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 RPL10P10-201ENST00000403509 664 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 RNU2-22P-201ENST00000411266 212 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXA1P49639 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC013262.1-201ENST00000426710 252 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AC099677.3-201ENST00000427081 395 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 CRIP1P1-201ENST00000427567 185 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC245291.3-201ENST00000443400 292 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC234771.2-201ENST00000445718 597 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 ZNF619P1-201ENST00000446539 752 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 RPS26P41-201ENST00000450370 284 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 RPL23AP23-201ENST00000452590 471 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 SDC4P-201ENST00000453285 601 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXA1P49639 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 RN7SL423P-201ENST00000486202 304 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 ARL4AP1-201ENST00000503220 705 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC095052.1-201ENST00000509955 863 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 IGHV7-34-1-201ENST00000519200 350 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 IGKV1OR22-1-201ENST00000521497 360 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXA1P49639 BICD1-206ENST00000551086 423 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXA1P49639 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC4.76□□□□□ -1.65
HOXA1P49639 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms