Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MIR1273E-201ENST00000581165 102 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 BNIP3P35-201ENST00000604530 490 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 AC242628.1-201ENST00000606810 391 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 AL139022.2-201ENST00000606934 443 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 CR589904.2-201ENST00000612533 440 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 AC007786.3-201ENST00000615154 596 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 AC025016.1-201ENST00000616746 682 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 AC241377.1-201ENST00000619797 406 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 AP006248.3-201ENST00000623580 594 ntBASIC5.75□□□□□ -1.49
PTPN9P43378 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.75□□□□□ -1.49
PTPN9P43378 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.75□□□□□ -1.49
PTPN9P43378 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
PTPN9P43378 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
PTPN9P43378 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
PTPN9P43378 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
PTPN9P43378 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
PTPN9P43378 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.74□□□□□ -1.49
PTPN9P43378 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 TMSB4XP4-201ENST00000323496 618 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 RN7SKP145-201ENST00000363291 303 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 RNU4-2-201ENST00000365668 141 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
PTPN9P43378 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 RN7SKP286-201ENST00000410894 299 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AL133482.1-201ENST00000415988 498 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.74□□□□□ -1.49
PTPN9P43378 RPS26P4-201ENST00000431743 355 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 NPM1P18-201ENST00000434232 732 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AP000281.1-201ENST00000444036 316 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC5.74□□□□□ -1.49
PTPN9P43378 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 AC073909.1-201ENST00000447112 999 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.74□□□□□ -1.49
PTPN9P43378 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.74□□□□□ -1.49
PTPN9P43378 AC104629.2-201ENST00000468627 598 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.74□□□□□ -1.49
PTPN9P43378 AC078857.1-201ENST00000469870 667 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AC105420.1-201ENST00000504389 582 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AC079064.1-201ENST00000528365 362 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC5.74□□□□□ -1.49
PTPN9P43378 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
PTPN9P43378 AC079148.1-201ENST00000565944 819 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 MIR4310-201ENST00000582950 57 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.74□□□□□ -1.49
PTPN9P43378 BNIP3P39-201ENST00000601077 554 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.74□□□□□ -1.49
PTPN9P43378 FO393422.1-201ENST00000603908 708 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AP004372.1-201ENST00000604842 844 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AL450270.1-201ENST00000606160 391 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.74□□□□□ -1.49
PTPN9P43378 RN7SL787P-201ENST00000613000 284 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AC010872.1-201ENST00000624225 675 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.74□□□□□ -1.49
PTPN9P43378 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.74□□□□□ -1.49
PTPN9P43378 AC083899.2-201ENST00000423285 1376 ntBASIC5.74□□□□□ -1.49
PTPN9P43378 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
PTPN9P43378 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTPN9P43378 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.74□□□□□ -1.49
PTPN9P43378 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
PTPN9P43378 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.73□□□□□ -1.49
PTPN9P43378 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.73□□□□□ -1.49
PTPN9P43378 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
PTPN9P43378 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTPN9P43378 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
PTPN9P43378 MRRFP1-201ENST00000435941 1675 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
PTPN9P43378 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
PTPN9P43378 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTPN9P43378 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTPN9P43378 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.73□□□□□ -1.49
PTPN9P43378 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTPN9P43378 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
PTPN9P43378 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
PTPN9P43378 MIR133A2-201ENST00000347538 102 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.73□□□□□ -1.49
PTPN9P43378 RNU6-1251P-201ENST00000364502 107 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTPN9P43378 SNORD56.6-201ENST00000384569 71 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 AL391422.1-201ENST00000402155 436 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 PTGES3P2-201ENST00000407942 482 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.73□□□□□ -1.49
PTPN9P43378 AC009506.2-201ENST00000420635 840 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 AL121882.1-201ENST00000422893 417 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.73□□□□□ -1.49
PTPN9P43378 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.73□□□□□ -1.49
PTPN9P43378 AC104843.2-201ENST00000427666 297 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 AC046176.1-201ENST00000435260 1170 ntBASIC5.73□□□□□ -1.49
PTPN9P43378 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.73□□□□□ -1.49
PTPN9P43378 AL359265.1-201ENST00000440296 795 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms