Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC6.18□□□□□ -1.42
BRCA1P38398 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.18□□□□□ -1.42
BRCA1P38398 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.18□□□□□ -1.42
BRCA1P38398 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC6.18□□□□□ -1.42
BRCA1P38398 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.18□□□□□ -1.42
BRCA1P38398 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.18□□□□□ -1.42
BRCA1P38398 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.18□□□□□ -1.42
BRCA1P38398 AC005831.1-201ENST00000624384 1697 ntBASIC6.18□□□□□ -1.42
BRCA1P38398 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC6.18□□□□□ -1.42
BRCA1P38398 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.18□□□□□ -1.42
BRCA1P38398 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
BRCA1P38398 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
BRCA1P38398 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.18□□□□□ -1.42
BRCA1P38398 UGT2B24P-201ENST00000514441 1597 ntBASIC6.18□□□□□ -1.42
BRCA1P38398 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.18□□□□□ -1.42
BRCA1P38398 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.18□□□□□ -1.42
BRCA1P38398 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
BRCA1P38398 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.18□□□□□ -1.42
BRCA1P38398 AL158152.1-201ENST00000602652 1435 ntBASIC6.18□□□□□ -1.42
BRCA1P38398 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC6.18□□□□□ -1.42
BRCA1P38398 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.17□□□□□ -1.42
BRCA1P38398 AC017079.1-201ENST00000333650 415 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.17□□□□□ -1.42
BRCA1P38398 RPS27AP12-201ENST00000429552 465 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 AL136455.1-201ENST00000441083 1240 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 RN7SL319P-201ENST00000480656 221 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 PPM1AP1-201ENST00000502740 1135 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.17□□□□□ -1.42
BRCA1P38398 AC093840.1-201ENST00000511599 336 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.17□□□□□ -1.42
BRCA1P38398 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC6.17□□□□□ -1.42
BRCA1P38398 AL356218.2-201ENST00000605264 187 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC6.17□□□□□ -1.42
BRCA1P38398 AC019206.1-201ENST00000621938 425 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
BRCA1P38398 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.17□□□□□ -1.42
BRCA1P38398 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.17□□□□□ -1.42
BRCA1P38398 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.17□□□□□ -1.42
BRCA1P38398 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.17□□□□□ -1.42
BRCA1P38398 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.17□□□□□ -1.42
BRCA1P38398 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 RPL11P3-201ENST00000395256 523 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
BRCA1P38398 RNU4-64P-201ENST00000410795 131 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 OR51B3P-201ENST00000412287 913 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 AL158073.1-201ENST00000426848 1104 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 RPS29P9-201ENST00000440360 171 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 RNU2-30P-201ENST00000516209 141 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 AC026688.1-201ENST00000520639 1168 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
BRCA1P38398 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.17□□□□□ -1.42
BRCA1P38398 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.17□□□□□ -1.42
BRCA1P38398 AC019322.1-201ENST00000571869 389 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
BRCA1P38398 BNIP3P35-201ENST00000604530 490 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
BRCA1P38398 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.17□□□□□ -1.42
BRCA1P38398 MAPK10-371ENST00000641952 5209 ntBASIC6.17□□□□□ -1.42
BRCA1P38398 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
BRCA1P38398 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.17□□□□□ -1.42
BRCA1P38398 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.16□□□□□ -1.42
BRCA1P38398 KYNUP3-201ENST00000574386 1341 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
BRCA1P38398 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
BRCA1P38398 AC006210.2-201ENST00000367074 1545 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
BRCA1P38398 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
BRCA1P38398 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
BRCA1P38398 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
BRCA1P38398 RNA5SP345-201ENST00000410646 108 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 NRBF2P2-201ENST00000413087 861 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 TDGF1P1-201ENST00000445734 527 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 AC044797.1-201ENST00000445744 679 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.16□□□□□ -1.42
BRCA1P38398 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.16□□□□□ -1.42
BRCA1P38398 AC098976.1-201ENST00000513014 541 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.16□□□□□ -1.42
BRCA1P38398 AP000619.2-201ENST00000546014 969 ntBASIC6.16□□□□□ -1.42
BRCA1P38398 MIR3939-201ENST00000582614 106 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms