Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 CYP4F27P-201ENST00000514557 494 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC093878.1-201ENST00000515630 432 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC104417.1-201ENST00000523974 751 ntBASIC5.88□□□□□ -1.47
MSX2P35548 PDCL2P2-201ENST00000533651 189 ntBASIC5.88□□□□□ -1.47
MSX2P35548 NF1P12-201ENST00000549593 583 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 AL049830.4-201ENST00000555149 351 ntBASIC5.88□□□□□ -1.47
MSX2P35548 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.88□□□□□ -1.47
MSX2P35548 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.88□□□□□ -1.47
MSX2P35548 RNU4ATAC-201ENST00000580972 127 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 RBM11P1-201ENST00000604951 799 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC108673.3-201ENST00000609183 335 ntBASIC5.88□□□□□ -1.47
MSX2P35548 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 AL031658.2-201ENST00000616850 651 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AP003072.4-201ENST00000624580 310 ntBASIC5.88□□□□□ -1.47
MSX2P35548 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 ASB8-218ENST00000629941 278 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 LINC02495-203ENST00000636704 242 ntBASIC5.88□□□□□ -1.47
MSX2P35548 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.88□□□□□ -1.47
MSX2P35548 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 SAMM50P1-201ENST00000455403 1399 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC010132.4-201ENST00000569883 1368 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC092104.1-201ENST00000497346 1441 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC005832.2-201ENST00000538921 1430 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC005702.3-201ENST00000585345 1447 ntBASIC5.88□□□□□ -1.47
MSX2P35548 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 AC095050.2-201ENST00000510748 1458 ntBASIC5.88□□□□□ -1.47
MSX2P35548 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 MTND5P23-201ENST00000430812 1655 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AL132640.2-201ENST00000559968 1698 ntBASIC5.88□□□□□ -1.47
MSX2P35548 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 AC004076.2-201ENST00000620532 3323 ntBASIC5.87□□□□□ -1.47
MSX2P35548 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX2P35548 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
MSX2P35548 ANKRD36P1-201ENST00000344424 659 ntBASIC5.87□□□□□ -1.47
MSX2P35548 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 SNORD16-201ENST00000362803 99 ntBASIC5.87□□□□□ -1.47
MSX2P35548 RNA5SP382-201ENST00000363355 112 ntBASIC5.87□□□□□ -1.47
MSX2P35548 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC5.87□□□□□ -1.47
MSX2P35548 RNU11-201ENST00000387069 134 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC019178.1-201ENST00000392337 440 ntBASIC5.87□□□□□ -1.47
MSX2P35548 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX2P35548 RNU2-17P-201ENST00000410290 190 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 AC004022.2-201ENST00000413824 193 ntBASIC5.87□□□□□ -1.47
MSX2P35548 RPLP1P10-201ENST00000413972 339 ntBASIC5.87□□□□□ -1.47
MSX2P35548 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 AL161742.1-201ENST00000418154 584 ntBASIC5.87□□□□□ -1.47
MSX2P35548 MTND4LP11-201ENST00000422184 280 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC019178.2-201ENST00000423595 505 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.87□□□□□ -1.47
MSX2P35548 OSTCP2-201ENST00000437956 444 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC016908.1-201ENST00000442571 1219 ntBASIC5.87□□□□□ -1.47
MSX2P35548 MTND4P18-201ENST00000447010 465 ntBASIC5.87□□□□□ -1.47
MSX2P35548 SEPT14P24-201ENST00000447236 180 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX2P35548 AC097262.1-201ENST00000452559 548 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX2P35548 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.87□□□□□ -1.47
MSX2P35548 RANP2-201ENST00000456833 229 ntBASIC5.87□□□□□ -1.47
MSX2P35548 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX2P35548 AC023245.1-201ENST00000468501 517 ntBASIC5.87□□□□□ -1.47
MSX2P35548 RPS10P28-201ENST00000480396 498 ntBASIC5.87□□□□□ -1.47
MSX2P35548 RPL10P7-201ENST00000495649 625 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX2P35548 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX2P35548 RNA5SP303-201ENST00000516192 130 ntBASIC5.87□□□□□ -1.47
MSX2P35548 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 AP002004.1-206ENST00000532441 876 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX2P35548 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX2P35548 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX2P35548 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.87□□□□□ -1.47
MSX2P35548 AGGF1P4-201ENST00000568249 801 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX2P35548 ZNF415P1-201ENST00000582279 1166 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC5.87□□□□□ -1.47
MSX2P35548 AL360012.1-201ENST00000602813 131 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AL078624.2-201ENST00000605063 554 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC005377.1-201ENST00000605126 456 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC022001.1-201ENST00000605193 268 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC072039.2-201ENST00000608883 439 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AL445423.1-201ENST00000609941 536 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AL159169.2-201ENST00000610061 1269 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AL157770.1-201ENST00000623049 439 ntBASIC5.87□□□□□ -1.47
MSX2P35548 AC010608.2-201ENST00000624830 470 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms