Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 RN7SL101P-201ENST00000496350 279 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 GAPDHP62-201ENST00000515313 990 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AC016550.3-201ENST00000515706 767 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 AC104115.2-201ENST00000523026 687 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 NOP56P3-201ENST00000549457 385 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC6.51□□□□□ -1.37
SMARCA1P28370 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.51□□□□□ -1.37
SMARCA1P28370 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AC012146.2-201ENST00000576545 416 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC6.51□□□□□ -1.37
SMARCA1P28370 MIR1273E-201ENST00000581165 102 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 H3F3BP2-201ENST00000583907 357 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AC091057.3-201ENST00000602684 733 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AC004477.3-201ENST00000614061 590 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 MIR8084-201ENST00000614105 89 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AC025574.2-201ENST00000615621 514 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.51□□□□□ -1.37
SMARCA1P28370 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.51□□□□□ -1.37
SMARCA1P28370 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
SMARCA1P28370 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 PWAR1-201ENST00000624188 2414 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 HSPD1P7-201ENST00000447985 1686 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC6.51□□□□□ -1.37
SMARCA1P28370 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.5□□□□□ -1.37
SMARCA1P28370 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 MTCO1P7-201ENST00000419523 1542 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.5□□□□□ -1.37
SMARCA1P28370 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 NLRP3P1-201ENST00000622303 1785 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 TMEM161BP1-201ENST00000457388 1457 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 U3.10-201ENST00000364459 214 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.5□□□□□ -1.37
SMARCA1P28370 MIR323B-201ENST00000385269 82 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AL009179.1-201ENST00000406085 265 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 RANP4-201ENST00000413361 655 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 OR6E1P-201ENST00000414424 923 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 CHEK2P5-201ENST00000423877 246 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC6.5□□□□□ -1.37
SMARCA1P28370 MTND4LP13-201ENST00000425022 298 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.5□□□□□ -1.37
SMARCA1P28370 PRUNEP1-201ENST00000425846 705 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC6.5□□□□□ -1.37
SMARCA1P28370 FMO7P-201ENST00000436045 768 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.5□□□□□ -1.37
SMARCA1P28370 AC245517.2-201ENST00000442890 346 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC6.5□□□□□ -1.37
SMARCA1P28370 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.5□□□□□ -1.37
SMARCA1P28370 YWHAEP1-201ENST00000453697 763 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AC239798.3-201ENST00000454459 408 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 RN7SL72P-201ENST00000460697 269 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 RPS17P5-201ENST00000498293 408 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AC104109.1-201ENST00000498563 436 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC6.5□□□□□ -1.37
SMARCA1P28370 AC109481.1-201ENST00000509173 282 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.5□□□□□ -1.37
SMARCA1P28370 AC093770.1-201ENST00000511559 571 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC6.5□□□□□ -1.37
SMARCA1P28370 PMS2P3-207ENST00000529061 717 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.5□□□□□ -1.37
SMARCA1P28370 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC6.5□□□□□ -1.37
SMARCA1P28370 AC006116.5-201ENST00000591936 559 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC6.5□□□□□ -1.37
SMARCA1P28370 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 CLIC4P2-201ENST00000601934 717 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AC104695.2-201ENST00000605056 775 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AL096803.3-201ENST00000609032 532 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AC093388.1-201ENST00000609166 430 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 AP000770.2-201ENST00000623694 100 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC6.5□□□□□ -1.37
SMARCA1P28370 AC099654.9-201ENST00000637055 678 ntBASIC6.5□□□□□ -1.37
SMARCA1P28370 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.5□□□□□ -1.37
SMARCA1P28370 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
SMARCA1P28370 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SMARCA1P28370 OR4F13P-202ENST00000560066 2054 ntBASIC6.49□□□□□ -1.37
SMARCA1P28370 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.49□□□□□ -1.37
SMARCA1P28370 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.49□□□□□ -1.37
SMARCA1P28370 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.49□□□□□ -1.37
SMARCA1P28370 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC6.49□□□□□ -1.37
SMARCA1P28370 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.49□□□□□ -1.37
SMARCA1P28370 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms