Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.31□□□□□ -1.4
COL5A3P25940 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL5A3P25940 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A3P25940 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
COL5A3P25940 AC139713.2-214ENST00000642059 1811 ntBASIC6.31□□□□□ -1.4
COL5A3P25940 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL5A3P25940 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL5A3P25940 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 AC125257.1-201ENST00000560400 2930 ntBASIC6.31□□□□□ -1.4
COL5A3P25940 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
COL5A3P25940 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL5A3P25940 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A3P25940 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL5A3P25940 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC6.31□□□□□ -1.4
COL5A3P25940 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC6.31□□□□□ -1.4
COL5A3P25940 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL5A3P25940 AC009779.8-201ENST00000641684 4384 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 RNA5SP223-201ENST00000365174 120 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A3P25940 CEACAMP6-201ENST00000452007 574 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A3P25940 AC104971.1-201ENST00000495117 578 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A3P25940 AC022360.1-201ENST00000521058 340 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 AC138701.1-201ENST00000524329 714 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 AP003080.1-202ENST00000526526 915 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 AC079064.1-201ENST00000528365 362 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A3P25940 MIR7853-201ENST00000584820 132 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A3P25940 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A3P25940 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.3□□□□□ -1.4
COL5A3P25940 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 AC133552.1-201ENST00000569988 4007 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.3□□□□□ -1.4
COL5A3P25940 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 LINC02035-201ENST00000610128 5476 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL5A3P25940 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.3□□□□□ -1.4
COL5A3P25940 MIR129-1-201ENST00000384972 72 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A3P25940 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 HMGB1P4-201ENST00000455362 567 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 AC083829.1-201ENST00000503756 657 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.3□□□□□ -1.4
COL5A3P25940 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6.3□□□□□ -1.4
COL5A3P25940 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A3P25940 AL022401.1-201ENST00000619498 108 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.3□□□□□ -1.4
COL5A3P25940 AC068724.3-201ENST00000625906 87 ntBASIC6.3□□□□□ -1.4
COL5A3P25940 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A3P25940 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.3□□□□□ -1.4
COL5A3P25940 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A3P25940 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A3P25940 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A3P25940 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A3P25940 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A3P25940 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A3P25940 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A3P25940 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
COL5A3P25940 AL035079.1-201ENST00000405210 287 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 AL645608.4-201ENST00000423619 154 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 GTF2IP2-201ENST00000424290 697 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 AC234779.1-201ENST00000425910 285 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 RPL7AP49-201ENST00000429522 581 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 AL591438.1-201ENST00000433508 581 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 EIF2S2P2-201ENST00000447161 982 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A3P25940 RN7SL244P-201ENST00000493405 297 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.29□□□□□ -1.4
COL5A3P25940 AL049839.1-201ENST00000556151 657 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC6.29□□□□□ -1.4
COL5A3P25940 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A3P25940 AP000919.1-201ENST00000582850 985 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 AC008782.1-201ENST00000603386 430 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 MLECP1-201ENST00000615893 709 ntBASIC6.29□□□□□ -1.4
COL5A3P25940 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.29□□□□□ -1.4
COL5A3P25940 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A3P25940 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A3P25940 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.29□□□□□ -1.4
COL5A3P25940 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms