Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RPS6P14-201ENST00000425165 719 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 OR7E116P-201ENST00000448529 957 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 RAB28P2-201ENST00000454299 641 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 CABYRP1-201ENST00000465493 1045 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC093663.2-201ENST00000484625 313 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC026782.2-201ENST00000510845 636 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC093770.1-201ENST00000511559 571 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 SNORA70.11-201ENST00000515987 138 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 SNORA70.13-201ENST00000516116 138 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC136777.2-201ENST00000522979 358 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AP000676.2-201ENST00000529711 301 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AP001804.2-201ENST00000533932 910 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC008126.1-201ENST00000549019 480 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 MIR4330-201ENST00000579077 105 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC027334.1-201ENST00000603257 310 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 SUGT1P3-202ENST00000604259 383 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 KATNBL1P5-201ENST00000605015 517 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC084824.5-201ENST00000612009 413 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC009704.2-201ENST00000618739 483 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC253576.2-201ENST00000618815 580 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC241377.1-201ENST00000619797 406 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AL391262.2-201ENST00000622466 494 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC110792.3-201ENST00000595906 1614 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 UGT2B24P-201ENST00000514441 1597 ntBASIC5.58□□□□□ -1.52
COL28A1Q2UY09 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
COL28A1Q2UY09 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 LINC01963-201ENST00000562038 3148 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 KYNUP3-201ENST00000574386 1341 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 RPL23P2-201ENST00000320371 421 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 SLC35E1P1-201ENST00000419313 864 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 RPL7L1P9-201ENST00000431298 745 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 PSMD10P3-201ENST00000437000 448 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC245517.2-201ENST00000442890 346 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 ZNF736P6Y-201ENST00000447526 1213 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 MTND6P32-201ENST00000457611 483 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 RN7SL352P-201ENST00000466002 277 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC099521.1-201ENST00000482557 334 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 OR7E157P-201ENST00000494376 911 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC079075.1-201ENST00000559543 878 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AP001357.1-201ENST00000586304 1053 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC002069.2-201ENST00000603580 883 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 PPATP2-201ENST00000605635 508 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AL022394.1-201ENST00000606979 292 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AL158211.2-201ENST00000607282 395 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC245389.2-201ENST00000616023 576 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 140.1 ms