Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXC4P09017 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HOXC4P09017 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXC4P09017 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HOXC4P09017 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
HOXC4P09017 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC4P09017 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC4P09017 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
HOXC4P09017 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.19□□□□□ -1.58
HOXC4P09017 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.19□□□□□ -1.58
HOXC4P09017 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
HOXC4P09017 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC4P09017 RNU1-106P-201ENST00000384382 164 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 MIR600-201ENST00000385007 98 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 TRAV35-201ENST00000390462 330 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXC4P09017 AL133482.1-201ENST00000415988 498 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.19□□□□□ -1.58
HOXC4P09017 AC073850.1-201ENST00000449243 255 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC4P09017 RN7SL610P-201ENST00000463845 291 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 AC097484.1-201ENST00000471148 389 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 RN7SL97P-201ENST00000486780 299 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 OR4A43P-201ENST00000532938 908 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 OR11J2P-201ENST00000555298 907 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 AC114947.2-201ENST00000565748 2125 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC4P09017 AC087763.1-201ENST00000603391 286 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 AP005131.7-201ENST00000610087 611 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 MTCO1P1-201ENST00000624263 1081 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC4P09017 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC4P09017 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC4P09017 AC012078.1-201ENST00000405035 1646 ntBASIC5.19□□□□□ -1.58
HOXC4P09017 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.19□□□□□ -1.58
HOXC4P09017 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC4P09017 THAP12P4-201ENST00000528321 2266 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 AC138907.8-201ENST00000623981 2256 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXC4P09017 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXC4P09017 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 AC019072.1-201ENST00000604535 1551 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HOXC4P09017 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 RNA5SP453-201ENST00000362503 119 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 RNA5SP90-201ENST00000364801 99 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 SNORA5.1-201ENST00000384275 131 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 SNORA48.4-201ENST00000391089 134 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 EI24P3-201ENST00000399046 1062 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HOXC4P09017 SNORA11B-201ENST00000408175 129 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 RN7SKP126-201ENST00000411143 300 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXC4P09017 HMGN2P27-201ENST00000427352 270 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXC4P09017 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXC4P09017 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 AC099670.2-201ENST00000435130 321 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXC4P09017 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXC4P09017 AC023271.1-201ENST00000445936 1090 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 KNOP1P3-201ENST00000446933 426 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXC4P09017 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXC4P09017 AC092490.3-201ENST00000545370 572 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXC4P09017 MIR3691-201ENST00000578066 90 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXC4P09017 AC008814.1-201ENST00000603797 406 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 AL445222.1-201ENST00000607259 628 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 MIR6133-201ENST00000617057 108 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 MIR6730-201ENST00000622213 67 ntBASIC5.18□□□□□ -1.58
HOXC4P09017 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HOXC4P09017 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC4P09017 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXC4P09017 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 RNU1-74P-201ENST00000384108 171 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms