Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 SMG1P4-204ENST00000523028 4131 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 U3.28-201ENST00000391249 210 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 SNORA11.3-201ENST00000408471 128 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 TRGV7-201ENST00000427089 353 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 RN7SL717P-201ENST00000478343 297 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 RN7SKP99-201ENST00000517028 307 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 OR4A17P-201ENST00000526032 904 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AC015720.2-201ENST00000567709 334 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 SNORD95-201ENST00000579879 68 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 SNORA11.6-201ENST00000619030 128 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AC007938.2-201ENST00000604666 2634 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AC083899.1-201ENST00000454465 3819 ntBASIC4.82□□□□□ -1.64
SKA3Q8IX90 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.82□□□□□ -1.64
SKA3Q8IX90 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC079097.1-201ENST00000512187 1399 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 RN7SKP293-201ENST00000411389 296 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 GABARAPL3-201ENST00000412799 354 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL133482.1-201ENST00000415988 498 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 Z93019.1-201ENST00000416450 973 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 RPL34P6-201ENST00000432390 345 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC012075.1-201ENST00000436549 580 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC073465.2-201ENST00000440938 498 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL358876.1-201ENST00000453364 1075 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC023141.9-201ENST00000458734 412 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 IGLVIV-64-201ENST00000518581 301 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 OR10D4P-201ENST00000525892 951 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC010615.3-201ENST00000597319 394 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC009237.13-201ENST00000603193 276 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL139124.1-201ENST00000609123 421 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 NF1P10-201ENST00000613227 742 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC073869.8-201ENST00000641806 335 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL731566.1-201ENST00000620490 1937 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC104623.2-202ENST00000623477 4002 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 SAMMSON-213ENST00000641336 1521 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 AL359715.3-201ENST00000569267 2123 ntBASIC4.81□□□□□ -1.64
SKA3Q8IX90 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SKA3Q8IX90 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SKA3Q8IX90 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
SKA3Q8IX90 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.8□□□□□ -1.64
SKA3Q8IX90 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms