Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TOMM20P2-201ENST00000540082 421 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 AC084824.2-201ENST00000548906 345 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL18A1P39060 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.64□□□□□ -1.35
COL18A1P39060 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.64□□□□□ -1.35
COL18A1P39060 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.64□□□□□ -1.35
COL18A1P39060 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC6.64□□□□□ -1.35
COL18A1P39060 AC079414.3-201ENST00000612986 1090 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.64□□□□□ -1.35
COL18A1P39060 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
COL18A1P39060 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.64□□□□□ -1.35
COL18A1P39060 LPP-208ENST00000448637 5835 ntTSL 5 BASIC6.64□□□□□ -1.35
COL18A1P39060 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC6.64□□□□□ -1.35
COL18A1P39060 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.64□□□□□ -1.35
COL18A1P39060 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
COL18A1P39060 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC6.64□□□□□ -1.35
COL18A1P39060 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL18A1P39060 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL18A1P39060 Y_RNA.126-201ENST00000363382 111 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 Z97832.1-201ENST00000402490 328 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.64□□□□□ -1.35
COL18A1P39060 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.64□□□□□ -1.35
COL18A1P39060 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.64□□□□□ -1.35
COL18A1P39060 CEACAMP6-201ENST00000452007 574 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 RN7SL189P-201ENST00000468631 289 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 AC007537.2-201ENST00000472093 511 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 ENPP7P9-201ENST00000514456 627 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 AP003080.1-202ENST00000526526 915 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC6.64□□□□□ -1.35
COL18A1P39060 MIR4284-201ENST00000578924 81 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL18A1P39060 AC005618.4-201ENST00000625053 554 ntBASIC6.64□□□□□ -1.35
COL18A1P39060 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL18A1P39060 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
COL18A1P39060 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL18A1P39060 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL18A1P39060 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 RN7SKP153-201ENST00000365026 316 ntBASIC6.63□□□□□ -1.35
COL18A1P39060 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
COL18A1P39060 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 AC234779.1-201ENST00000425910 285 ntBASIC6.63□□□□□ -1.35
COL18A1P39060 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.63□□□□□ -1.35
COL18A1P39060 PSAT1P4-201ENST00000466500 526 ntBASIC6.63□□□□□ -1.35
COL18A1P39060 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6.63□□□□□ -1.35
COL18A1P39060 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 AP001267.4-201ENST00000602598 545 ntBASIC6.63□□□□□ -1.35
COL18A1P39060 AC139713.2-214ENST00000642059 1811 ntBASIC6.63□□□□□ -1.35
COL18A1P39060 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
COL18A1P39060 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.63□□□□□ -1.35
COL18A1P39060 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL18A1P39060 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC6.63□□□□□ -1.35
COL18A1P39060 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.62□□□□□ -1.35
COL18A1P39060 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.62□□□□□ -1.35
COL18A1P39060 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.62□□□□□ -1.35
COL18A1P39060 MED28P3-201ENST00000444288 531 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 BX842559.2-201ENST00000451418 605 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AC022360.1-201ENST00000521058 340 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.62□□□□□ -1.35
COL18A1P39060 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.62□□□□□ -1.35
COL18A1P39060 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.62□□□□□ -1.35
COL18A1P39060 AL022401.1-201ENST00000619498 108 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AC011944.2-201ENST00000624440 683 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
COL18A1P39060 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.62□□□□□ -1.35
COL18A1P39060 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
COL18A1P39060 NCLP2-201ENST00000416078 1462 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 AC099654.2-201ENST00000433031 1980 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.62□□□□□ -1.35
COL18A1P39060 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.62□□□□□ -1.35
COL18A1P39060 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AL021331.1-201ENST00000402817 582 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AL136116.2-201ENST00000404020 785 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms