Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMARCA1P28370 EEF1A1P30-201ENST00000429708 1315 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMARCA1P28370 KYNUP3-201ENST00000574386 1341 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMARCA1P28370 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMARCA1P28370 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMARCA1P28370 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMARCA1P28370 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.54□□□□□ -1.36
SMARCA1P28370 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SMARCA1P28370 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SMARCA1P28370 RN7SKP81-201ENST00000365603 331 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 OR13C3-201ENST00000374781 1108 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.54□□□□□ -1.36
SMARCA1P28370 OR13Z1P-201ENST00000416141 834 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.54□□□□□ -1.36
SMARCA1P28370 ARL2BPP3-201ENST00000421226 480 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 EIF4A1P7-201ENST00000421800 1220 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 REREP1Y-201ENST00000422655 198 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.54□□□□□ -1.36
SMARCA1P28370 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 REREP2Y-201ENST00000439103 200 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 CYCSP51-201ENST00000443545 318 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 SETP20-201ENST00000457046 852 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 RN7SL205P-201ENST00000490174 284 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 TRAV31-201ENST00000502780 342 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 DUTP7-201ENST00000507982 486 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 ST13P12-201ENST00000508958 1094 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.54□□□□□ -1.36
SMARCA1P28370 IGLVIV-64-201ENST00000518581 301 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 HMGB1P46-201ENST00000520062 610 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC6.54□□□□□ -1.36
SMARCA1P28370 AC112191.2-201ENST00000522428 333 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.54□□□□□ -1.36
SMARCA1P28370 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 AP001804.2-201ENST00000533932 910 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 AL049872.1-201ENST00000556323 322 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC6.54□□□□□ -1.36
SMARCA1P28370 AC005242.1-201ENST00000585658 438 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.54□□□□□ -1.36
SMARCA1P28370 FO393422.1-201ENST00000603908 708 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.54□□□□□ -1.36
SMARCA1P28370 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.54□□□□□ -1.36
SMARCA1P28370 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC6.54□□□□□ -1.36
SMARCA1P28370 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 AL355480.1-201ENST00000629041 99 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SMARCA1P28370 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 MTND5P23-201ENST00000430812 1655 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 SAMM50P1-201ENST00000455403 1399 ntBASIC6.54□□□□□ -1.36
SMARCA1P28370 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SMARCA1P28370 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SMARCA1P28370 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMARCA1P28370 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SMARCA1P28370 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMARCA1P28370 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.53□□□□□ -1.36
SMARCA1P28370 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 AL356317.1-201ENST00000396110 1436 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 MTCO1P4-201ENST00000520516 1409 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 GAPDHP24-201ENST00000328713 983 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 MIR143-201ENST00000385300 106 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AL512422.1-201ENST00000407033 553 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AL590399.2-201ENST00000427536 309 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 MTATP6P17-201ENST00000431030 672 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AL512661.1-201ENST00000434586 1253 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AC006335.2-201ENST00000437993 330 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AL645931.1-201ENST00000439737 410 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 NANOGP9-201ENST00000439890 892 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AC073909.1-201ENST00000447112 999 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC023141.9-201ENST00000458734 412 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 ATP5LP5-201ENST00000483050 299 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC6.53□□□□□ -1.36
SMARCA1P28370 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC6.53□□□□□ -1.36
SMARCA1P28370 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC022404.1-201ENST00000555320 273 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms