Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FMO7P-201ENST00000436045 768 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC090804.1-201ENST00000448870 490 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 AL450023.1-201ENST00000450868 751 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 RN7SL214P-201ENST00000487317 265 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 RN7SL466P-201ENST00000497546 295 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC074087.1-201ENST00000512059 724 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC007225.2-201ENST00000562529 256 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 PPATP2-201ENST00000605635 508 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 MIR6826-201ENST00000617808 98 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.09□□□□□ -1.76
HLA-DMBP28068 AFP-201ENST00000226359 1914 ntTSL 5 BASIC4.09□□□□□ -1.76
HLA-DMBP28068 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.09□□□□□ -1.76
HLA-DMBP28068 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.76
HLA-DMBP28068 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
HLA-DMBP28068 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HLA-DMBP28068 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
HLA-DMBP28068 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 BMS1P17-202ENST00000416720 316 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC019185.1-201ENST00000442718 389 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 AL450996.1-201ENST00000445574 1202 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC073909.1-201ENST00000447112 999 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC092754.1-201ENST00000472975 479 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 ENPP7P11-201ENST00000505915 627 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 IMPA1P1-201ENST00000510718 842 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AP004607.2-201ENST00000533949 322 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 RBM22P12-201ENST00000567098 1255 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 MIR4472-2-201ENST00000582069 67 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AL118522.2-201ENST00000616045 615 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC007683.2-201ENST00000624681 714 ntBASIC4.08□□□□□ -1.76
HLA-DMBP28068 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
HLA-DMBP28068 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HLA-DMBP28068 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HLA-DMBP28068 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.07□□□□□ -1.76
HLA-DMBP28068 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms