Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.6□□□□□ -1.51
APOEP02649 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
APOEP02649 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
APOEP02649 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
APOEP02649 Z83820.1-201ENST00000456978 1499 ntBASIC5.6□□□□□ -1.51
APOEP02649 AC112198.2-201ENST00000426589 6996 ntBASIC5.6□□□□□ -1.51
APOEP02649 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.6□□□□□ -1.51
APOEP02649 CIR1P2-201ENST00000514821 1342 ntBASIC5.6□□□□□ -1.51
APOEP02649 RNA5SP339-201ENST00000390987 122 ntBASIC5.6□□□□□ -1.51
APOEP02649 HSPA8P15-201ENST00000401676 786 ntBASIC5.6□□□□□ -1.51
APOEP02649 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.6□□□□□ -1.51
APOEP02649 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.6□□□□□ -1.51
APOEP02649 AL606490.1-201ENST00000452266 765 ntBASIC5.6□□□□□ -1.51
APOEP02649 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.6□□□□□ -1.51
APOEP02649 AC011225.1-201ENST00000457751 369 ntBASIC5.6□□□□□ -1.51
APOEP02649 AC023424.1-201ENST00000496058 459 ntBASIC5.6□□□□□ -1.51
APOEP02649 AC021193.1-201ENST00000511607 420 ntBASIC5.6□□□□□ -1.51
APOEP02649 AP004607.2-201ENST00000533949 322 ntBASIC5.6□□□□□ -1.51
APOEP02649 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.6□□□□□ -1.51
APOEP02649 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
APOEP02649 AC126177.5-201ENST00000549599 178 ntBASIC5.6□□□□□ -1.51
APOEP02649 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.6□□□□□ -1.51
APOEP02649 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
APOEP02649 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
APOEP02649 RN7SL356P-201ENST00000582228 248 ntBASIC5.6□□□□□ -1.51
APOEP02649 SUMO2P15-201ENST00000604285 278 ntBASIC5.6□□□□□ -1.51
APOEP02649 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.6□□□□□ -1.51
APOEP02649 AC136428.4-201ENST00000634254 1155 ntBASIC5.6□□□□□ -1.51
APOEP02649 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
APOEP02649 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
APOEP02649 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.6□□□□□ -1.51
APOEP02649 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
APOEP02649 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
APOEP02649 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
APOEP02649 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
APOEP02649 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
APOEP02649 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
APOEP02649 AL078621.3-201ENST00000623707 2042 ntBASIC5.59□□□□□ -1.51
APOEP02649 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.59□□□□□ -1.51
APOEP02649 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.59□□□□□ -1.51
APOEP02649 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
APOEP02649 PPIAP9-201ENST00000403866 498 ntBASIC5.59□□□□□ -1.51
APOEP02649 MIR1286-201ENST00000408112 78 ntBASIC5.59□□□□□ -1.51
APOEP02649 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
APOEP02649 MARK2P12-201ENST00000420129 585 ntBASIC5.59□□□□□ -1.51
APOEP02649 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.59□□□□□ -1.51
APOEP02649 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.59□□□□□ -1.51
APOEP02649 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.59□□□□□ -1.51
APOEP02649 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.59□□□□□ -1.51
APOEP02649 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.59□□□□□ -1.51
APOEP02649 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.59□□□□□ -1.51
APOEP02649 AC009027.1-201ENST00000604510 479 ntBASIC5.59□□□□□ -1.51
APOEP02649 AL356608.1-201ENST00000610034 820 ntBASIC5.59□□□□□ -1.51
APOEP02649 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
APOEP02649 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
APOEP02649 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
APOEP02649 AC100757.1-201ENST00000616872 1835 ntBASIC5.59□□□□□ -1.51
APOEP02649 MUC2-202ENST00000613187 4845 ntBASIC5.59□□□□□ -1.51
APOEP02649 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
APOEP02649 AC133552.1-201ENST00000569988 4007 ntBASIC5.59□□□□□ -1.51
APOEP02649 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.59□□□□□ -1.52
APOEP02649 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
APOEP02649 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.58□□□□□ -1.52
APOEP02649 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
APOEP02649 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
APOEP02649 SNORA67-201ENST00000384423 137 ntBASIC5.58□□□□□ -1.52
APOEP02649 RNU1-149P-201ENST00000390870 161 ntBASIC5.58□□□□□ -1.52
APOEP02649 DBIP1-201ENST00000401435 260 ntBASIC5.58□□□□□ -1.52
APOEP02649 AL358178.1-201ENST00000407698 397 ntBASIC5.58□□□□□ -1.52
APOEP02649 RPL35AP24-201ENST00000413846 330 ntBASIC5.58□□□□□ -1.52
APOEP02649 GTF3AP1-201ENST00000416942 1004 ntBASIC5.58□□□□□ -1.52
APOEP02649 HSPE1P16-201ENST00000426640 348 ntBASIC5.58□□□□□ -1.52
APOEP02649 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.58□□□□□ -1.52
APOEP02649 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.58□□□□□ -1.52
APOEP02649 RPS26P39-201ENST00000469206 341 ntBASIC5.58□□□□□ -1.52
APOEP02649 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.58□□□□□ -1.52
APOEP02649 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.58□□□□□ -1.52
APOEP02649 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.58□□□□□ -1.52
APOEP02649 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.58□□□□□ -1.52
APOEP02649 AC004825.1-201ENST00000555068 586 ntBASIC5.58□□□□□ -1.52
APOEP02649 AC109583.2-201ENST00000617367 129 ntBASIC5.58□□□□□ -1.52
APOEP02649 AC004808.2-201ENST00000627965 773 ntBASIC5.58□□□□□ -1.52
APOEP02649 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
APOEP02649 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
APOEP02649 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.58□□□□□ -1.52
APOEP02649 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.58□□□□□ -1.52
APOEP02649 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
APOEP02649 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
APOEP02649 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
APOEP02649 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
APOEP02649 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.57□□□□□ -1.52
APOEP02649 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
APOEP02649 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.57□□□□□ -1.52
APOEP02649 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
APOEP02649 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
APOEP02649 AC002525.1-201ENST00000624392 1622 ntBASIC5.57□□□□□ -1.52
APOEP02649 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
APOEP02649 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
APOEP02649 AC005294.1-201ENST00000355509 281 ntBASIC5.57□□□□□ -1.52
APOEP02649 RNA5SP183-201ENST00000362452 119 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms