Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXA3O43365 RNU6-956P-201ENST00000458868 103 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 GYG1P1-201ENST00000460864 698 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 RPL7AP23-201ENST00000482625 776 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AC117395.1-201ENST00000487390 403 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXA3O43365 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC110775.1-201ENST00000513721 462 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 EEF1B2P2-201ENST00000519625 676 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXA3O43365 AP002963.1-201ENST00000530590 184 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AP001317.1-201ENST00000531194 960 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXA3O43365 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXA3O43365 MIR4271-201ENST00000582451 67 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXA3O43365 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXA3O43365 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.43□□□□□ -1.54
HOXA3O43365 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC103881.1-201ENST00000603476 538 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AL136363.2-201ENST00000604173 851 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AC011891.2-201ENST00000604949 397 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AC018714.1-201ENST00000605028 208 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AC128687.1-201ENST00000605304 619 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 RNU6-84P-201ENST00000607737 102 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC012676.3-201ENST00000614983 479 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXA3O43365 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXA3O43365 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXA3O43365 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 AC245100.2-201ENST00000454544 1679 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 MTND4P31-201ENST00000425607 1343 ntBASIC5.43□□□□□ -1.54
HOXA3O43365 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXA3O43365 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
HOXA3O43365 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXA3O43365 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXA3O43365 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXA3O43365 MROH3P-201ENST00000435735 2676 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC122713.2-201ENST00000624942 3335 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 CDY7P-201ENST00000429883 1604 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HOXA3O43365 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HOXA3O43365 RNA5SP321-201ENST00000362722 111 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 NPM1P38-201ENST00000403835 865 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 RPL12P23-201ENST00000405880 490 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.42□□□□□ -1.54
HOXA3O43365 MRPS36P1-201ENST00000421291 307 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 MTND4LP11-201ENST00000422184 280 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 HMGN1P6-201ENST00000438508 291 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AL137845.2-201ENST00000444292 988 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 TPTE2P6-202ENST00000445572 1007 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC007383.1-201ENST00000445875 636 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC135721.2-201ENST00000464237 300 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC073522.1-201ENST00000483312 377 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC073610.1-201ENST00000489971 396 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 RPS27P20-201ENST00000492051 246 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA3O43365 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 MTATP6P22-201ENST00000507369 598 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC079140.3-201ENST00000511111 550 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC5.42□□□□□ -1.54
HOXA3O43365 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC084337.1-201ENST00000524809 686 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 OR4C2P-201ENST00000530855 1064 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HOXA3O43365 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms