Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TCP1P3-201ENST00000414406 1498 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 U3.28-201ENST00000391249 210 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC079355.1-201ENST00000421770 223 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 SRSF1P1-201ENST00000424058 520 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 CYCSP12-201ENST00000437729 300 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 RPL7P45-201ENST00000455851 743 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 RN7SL447P-201ENST00000494711 245 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 BX510359.5-201ENST00000515651 304 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 SCARNA16.4-201ENST00000516956 187 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 IGKV2-18-201ENST00000522607 343 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 BLZF2P-201ENST00000553776 1130 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC007342.5-201ENST00000571340 2142 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 MIR3176-201ENST00000582210 90 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC060766.1-201ENST00000590824 627 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 SNORA35B-201ENST00000607417 129 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS35Q96QK1 SAMMSON-209ENST00000641222 1100 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 AC073869.8-201ENST00000641806 335 ntBASIC5.4□□□□□ -1.54
VPS35Q96QK1 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS35Q96QK1 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS35Q96QK1 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS35Q96QK1 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.4□□□□□ -1.55
VPS35Q96QK1 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS35Q96QK1 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
VPS35Q96QK1 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.4□□□□□ -1.55
VPS35Q96QK1 SYT14P1-202ENST00000600441 1448 ntBASIC5.4□□□□□ -1.55
VPS35Q96QK1 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 Z83820.1-201ENST00000456978 1499 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC007938.2-201ENST00000604666 2634 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 MIR133B-201ENST00000362210 119 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 RNA5SP335-201ENST00000363817 110 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC009804.1-201ENST00000400949 179 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 HSPE1P16-201ENST00000426640 348 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 NDUFB4P8-201ENST00000435351 367 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 MTND2P40-201ENST00000436718 841 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 RN7SL197P-201ENST00000466981 299 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 AL133445.1-201ENST00000467051 452 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 SIAH1P1-201ENST00000479411 923 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC016687.1-201ENST00000482574 353 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC109464.1-201ENST00000511091 819 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 RPL7L1P4-201ENST00000513004 707 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 RFPL4AP3-201ENST00000515267 345 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC130364.2-201ENST00000528639 604 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 LSM3P2-201ENST00000551246 273 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC007225.2-201ENST00000562529 256 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AP005901.4-201ENST00000577336 569 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 AP005262.1-201ENST00000582646 997 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 AL078621.3-201ENST00000623707 2042 ntBASIC5.39□□□□□ -1.55
VPS35Q96QK1 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms