Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 RN7SKP238-201ENST00000516483 249 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 ODF1-202ENST00000518835 368 ntTSL 3 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC092121.1-201ENST00000569452 202 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 MIR4701-201ENST00000583094 63 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 ELOCP28-201ENST00000590044 317 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC141002.1-201ENST00000607025 279 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 MIR7155-201ENST00000615925 56 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AL133370.2-201ENST00000619934 439 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 WDR95P-201ENST00000425638 1542 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 NLRP3P1-201ENST00000622303 1785 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 AC109780.1-201ENST00000451768 1344 ntBASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
PDLIM3Q53GG5 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 DHFRP2-201ENST00000414224 547 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 CUBNP2-201ENST00000443534 1139 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AP000281.1-201ENST00000444036 316 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 NPM1P39-201ENST00000449818 867 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 OTX2P1-201ENST00000450956 354 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AL353718.1-201ENST00000451028 517 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AC108157.1-201ENST00000510511 539 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AC136777.2-201ENST00000522979 358 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AL589674.2-201ENST00000604304 337 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 MIR6820-201ENST00000611508 62 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AL080312.2-201ENST00000613001 630 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 RMST_5.1-201ENST00000618704 126 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AL035661.1-201ENST00000620459 1144 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AP006248.3-201ENST00000623580 594 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AC073342.3-201ENST00000624211 193 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AL138960.2-201ENST00000625145 535 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 PARP4P2-201ENST00000446672 3326 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 THAP12P9-201ENST00000503971 2360 ntBASIC4.89□□□□□ -1.63
PDLIM3Q53GG5 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
PDLIM3Q53GG5 AC018717.1-201ENST00000457712 1505 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms