Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 OR5D2P-201ENST00000524390 911 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.99□□□□□ -1.61
FOXA1P55317 AC022404.1-201ENST00000555320 273 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC4.99□□□□□ -1.61
FOXA1P55317 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.99□□□□□ -1.61
FOXA1P55317 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC4.99□□□□□ -1.61
FOXA1P55317 AC018695.5-201ENST00000605872 315 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.99□□□□□ -1.61
FOXA1P55317 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 MIR6861-201ENST00000618657 64 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 BX005214.3-202ENST00000619809 325 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 AC138965.3-201ENST00000623875 498 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 AL355480.1-201ENST00000629041 99 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.99□□□□□ -1.61
FOXA1P55317 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.99□□□□□ -1.61
FOXA1P55317 AP000550.3-201ENST00000637734 379 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.99□□□□□ -1.61
FOXA1P55317 AL672167.1-204ENST00000641875 3017 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.99□□□□□ -1.61
FOXA1P55317 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.99□□□□□ -1.61
FOXA1P55317 AC235565.1-201ENST00000456962 1325 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.98□□□□□ -1.61
FOXA1P55317 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
FOXA1P55317 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
FOXA1P55317 AC005005.4-201ENST00000623789 16698 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.98□□□□□ -1.61
FOXA1P55317 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
FOXA1P55317 AC013442.1-201ENST00000397347 228 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC4.98□□□□□ -1.61
FOXA1P55317 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.98□□□□□ -1.61
FOXA1P55317 CDY17P-201ENST00000414121 1282 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 VN1R3-201ENST00000418822 919 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 AL133325.1-201ENST00000421090 382 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 AC079807.1-201ENST00000429993 481 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 RPS29P14-201ENST00000431518 171 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.98□□□□□ -1.61
FOXA1P55317 RPS29P10-201ENST00000439197 166 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 SIAH1P1-201ENST00000479411 923 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 RN7SL447P-201ENST00000494711 245 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.98□□□□□ -1.61
FOXA1P55317 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.98□□□□□ -1.61
FOXA1P55317 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.98□□□□□ -1.61
FOXA1P55317 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.98□□□□□ -1.61
FOXA1P55317 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC4.98□□□□□ -1.61
FOXA1P55317 AC127381.1-201ENST00000555979 939 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.98□□□□□ -1.61
FOXA1P55317 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC4.98□□□□□ -1.61
FOXA1P55317 NDUFA5P11-201ENST00000567995 343 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 AC020978.7-201ENST00000575953 1187 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 MIR3614-201ENST00000581261 86 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 AC007204.2-201ENST00000615022 616 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 AP000648.2-201ENST00000624182 404 ntBASIC4.98□□□□□ -1.61
FOXA1P55317 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.98□□□□□ -1.61
FOXA1P55317 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
FOXA1P55317 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
FOXA1P55317 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
FOXA1P55317 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC4.98□□□□□ -1.61
FOXA1P55317 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
FOXA1P55317 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.97□□□□□ -1.61
FOXA1P55317 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.97□□□□□ -1.61
FOXA1P55317 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 RN7SKP15-201ENST00000364742 309 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
FOXA1P55317 CTSL3P-202ENST00000412179 788 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.97□□□□□ -1.61
FOXA1P55317 AL139148.1-201ENST00000427122 680 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.97□□□□□ -1.61
FOXA1P55317 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.97□□□□□ -1.61
FOXA1P55317 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.97□□□□□ -1.61
FOXA1P55317 AC012512.1-201ENST00000446594 718 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 BTF3P6-201ENST00000448054 499 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.97□□□□□ -1.61
FOXA1P55317 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC4.97□□□□□ -1.61
FOXA1P55317 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.97□□□□□ -1.61
FOXA1P55317 AC015864.1-201ENST00000496512 544 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms