Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC005297.1-201ENST00000444765 862 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 AC074386.1-201ENST00000476560 767 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 AC093827.1-201ENST00000480094 861 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 CDC42P3-201ENST00000518493 633 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 AL049872.1-201ENST00000556323 322 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 BNIP3P41-202ENST00000616656 861 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 MIR6886-201ENST00000619864 61 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 YES1P1-201ENST00000418510 1628 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 MIR143-201ENST00000385300 106 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 U3.25-201ENST00000391209 220 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 AL133173.1-201ENST00000423458 397 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 TNPO1P1-201ENST00000423641 1138 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC113412.1-201ENST00000425840 504 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 RPL19P16-201ENST00000433839 588 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC138866.2-201ENST00000508650 584 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 AL671862.1-201ENST00000515851 349 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 RNA5SP362-201ENST00000516048 118 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 AL589674.2-201ENST00000604304 337 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC104695.2-201ENST00000605056 775 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC244107.2-201ENST00000611773 76 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC008115.3-201ENST00000614874 549 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 uc_338.7-201ENST00000621834 124 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 Z83820.1-201ENST00000456978 1499 ntBASIC4.1□□□□□ -1.75
HLA-DMBP28068 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HLA-DMBP28068 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DMBP28068 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 RNU6-249P-201ENST00000363016 102 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 RN7SKP6-201ENST00000364795 319 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HLA-DMBP28068 OR1L6-202ENST00000373684 1044 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 MIR551A-201ENST00000385042 96 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 OR3A2-201ENST00000408891 1076 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.09□□□□□ -1.75
HLA-DMBP28068 RPL7AP49-201ENST00000429522 581 ntBASIC4.09□□□□□ -1.75
HLA-DMBP28068 AL591438.1-201ENST00000433508 581 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 2900 ms