Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
MSH3P20585 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.47□□□□□ -1.53
MSH3P20585 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.47□□□□□ -1.53
MSH3P20585 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 AC006484.1-201ENST00000435086 1884 ntBASIC5.47□□□□□ -1.53
MSH3P20585 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSH3P20585 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
MSH3P20585 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
MSH3P20585 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
MSH3P20585 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
MSH3P20585 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
MSH3P20585 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 RN7SKP124-201ENST00000364730 341 ntBASIC5.46□□□□□ -1.54
MSH3P20585 SNORA70.6-201ENST00000383934 134 ntBASIC5.46□□□□□ -1.54
MSH3P20585 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 RPSAP35-201ENST00000413753 818 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 AC106901.1-201ENST00000425086 698 ntBASIC5.46□□□□□ -1.54
MSH3P20585 Z85994.2-201ENST00000434327 452 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 AL359265.1-201ENST00000440296 795 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AL390119.1-201ENST00000440329 312 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AC114878.1-201ENST00000441166 358 ntBASIC5.46□□□□□ -1.54
MSH3P20585 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 AL356390.1-201ENST00000455684 397 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AL136038.1-201ENST00000497246 351 ntBASIC5.46□□□□□ -1.54
MSH3P20585 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.46□□□□□ -1.54
MSH3P20585 AC009268.1-201ENST00000561352 1203 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 MIR7853-201ENST00000584820 132 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.46□□□□□ -1.54
MSH3P20585 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.46□□□□□ -1.54
MSH3P20585 AC010487.1-201ENST00000594408 1172 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AC011445.2-201ENST00000599274 173 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AL118522.2-201ENST00000616045 615 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AC004808.2-201ENST00000627965 773 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AL163152.1-201ENST00000642001 374 ntBASIC5.46□□□□□ -1.54
MSH3P20585 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
MSH3P20585 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
MSH3P20585 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSH3P20585 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 OR9K1P-202ENST00000641111 3217 ntBASIC5.46□□□□□ -1.54
MSH3P20585 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.46□□□□□ -1.54
MSH3P20585 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSH3P20585 AC083843.2-201ENST00000568248 6253 ntBASIC5.45□□□□□ -1.54
MSH3P20585 CASC19-248ENST00000641674 1356 ntBASIC5.45□□□□□ -1.54
MSH3P20585 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.45□□□□□ -1.54
MSH3P20585 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.45□□□□□ -1.54
MSH3P20585 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSH3P20585 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
MSH3P20585 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.45□□□□□ -1.54
MSH3P20585 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.45□□□□□ -1.54
MSH3P20585 MT-RNR1-201ENST00000389680 954 ntBASIC5.45□□□□□ -1.54
MSH3P20585 SNORA40.4-201ENST00000390971 128 ntBASIC5.45□□□□□ -1.54
MSH3P20585 U3.28-201ENST00000391249 210 ntBASIC5.45□□□□□ -1.54
MSH3P20585 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.45□□□□□ -1.54
MSH3P20585 AL133482.1-201ENST00000415988 498 ntBASIC5.45□□□□□ -1.54
MSH3P20585 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC5.45□□□□□ -1.54
MSH3P20585 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSH3P20585 AL136231.1-201ENST00000429407 730 ntBASIC5.45□□□□□ -1.54
MSH3P20585 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.45□□□□□ -1.54
MSH3P20585 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.45□□□□□ -1.54
MSH3P20585 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.45□□□□□ -1.54
MSH3P20585 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.45□□□□□ -1.54
MSH3P20585 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.45□□□□□ -1.54
MSH3P20585 AC025181.1-201ENST00000477507 416 ntBASIC5.45□□□□□ -1.54
MSH3P20585 DEFB109A-201ENST00000482450 265 ntBASIC5.45□□□□□ -1.54
MSH3P20585 SEPT10P1-201ENST00000517342 1162 ntBASIC5.45□□□□□ -1.54
MSH3P20585 KCTD9P6-201ENST00000522306 950 ntBASIC5.45□□□□□ -1.54
MSH3P20585 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.45□□□□□ -1.54
MSH3P20585 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.45□□□□□ -1.54
MSH3P20585 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.45□□□□□ -1.54
MSH3P20585 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
MSH3P20585 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC5.45□□□□□ -1.54
MSH3P20585 AP005403.1-201ENST00000579720 229 ntBASIC5.45□□□□□ -1.54
MSH3P20585 RPL21P136-201ENST00000605378 396 ntBASIC5.45□□□□□ -1.54
MSH3P20585 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSH3P20585 AC092574.1-201ENST00000609771 420 ntBASIC5.45□□□□□ -1.54
MSH3P20585 AC117490.2-201ENST00000610042 594 ntBASIC5.45□□□□□ -1.54
MSH3P20585 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.45□□□□□ -1.54
MSH3P20585 AL162574.1-201ENST00000615702 950 ntBASIC5.45□□□□□ -1.54
MSH3P20585 MIR4302-201ENST00000638058 60 ntBASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms