Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL445493.3-201ENST00000619568 477 ntBASIC4.98□□□□□ -1.61
LMX1BO60663 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
LMX1BO60663 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC4.98□□□□□ -1.61
LMX1BO60663 AL356118.1-201ENST00000635272 1078 ntBASIC4.98□□□□□ -1.61
LMX1BO60663 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
LMX1BO60663 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
LMX1BO60663 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.98□□□□□ -1.61
LMX1BO60663 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
LMX1BO60663 Z83820.1-201ENST00000456978 1499 ntBASIC4.98□□□□□ -1.61
LMX1BO60663 UGT2B24P-201ENST00000514441 1597 ntBASIC4.98□□□□□ -1.61
LMX1BO60663 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
LMX1BO60663 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
LMX1BO60663 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC4.98□□□□□ -1.61
LMX1BO60663 AL031595.2-201ENST00000624215 19071 ntBASIC4.98□□□□□ -1.61
LMX1BO60663 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 AC053481.2-202ENST00000582394 1500 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC4.97□□□□□ -1.61
LMX1BO60663 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC4.97□□□□□ -1.61
LMX1BO60663 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 AC139426.3-201ENST00000605648 2059 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.97□□□□□ -1.61
LMX1BO60663 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC090220.1-201ENST00000593078 1699 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 GAPDHP24-201ENST00000328713 983 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 RNU4-39P-201ENST00000362455 127 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 MIR130A-201ENST00000385274 89 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 AC093155.2-201ENST00000420734 937 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AL355433.1-201ENST00000422804 300 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AJ239321.1-201ENST00000424255 564 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC126120.1-201ENST00000431082 470 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 SUMO2P3-201ENST00000438311 288 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC098826.2-201ENST00000452011 651 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 CLIC4P1-201ENST00000453177 535 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 RN7SL57P-201ENST00000493687 290 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC139697.1-201ENST00000548429 745 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AC084824.2-201ENST00000548906 345 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.97□□□□□ -1.61
LMX1BO60663 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC006530.1-201ENST00000555980 571 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC027176.2-201ENST00000559166 746 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 CD24P2-201ENST00000565486 219 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AC027216.1-201ENST00000577726 685 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 DHFRP1-201ENST00000579682 559 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 MIR4505-201ENST00000582238 73 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 AL021707.7-201ENST00000607991 416 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.97□□□□□ -1.61
LMX1BO60663 MIR6730-201ENST00000622213 67 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.97□□□□□ -1.61
LMX1BO60663 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC4.97□□□□□ -1.61
LMX1BO60663 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC4.97□□□□□ -1.61
LMX1BO60663 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.97□□□□□ -1.61
LMX1BO60663 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
LMX1BO60663 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
LMX1BO60663 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
LMX1BO60663 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 AL513548.1-201ENST00000562904 1724 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
LMX1BO60663 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.97□□□□□ -1.61
LMX1BO60663 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.97□□□□□ -1.61
LMX1BO60663 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
LMX1BO60663 AC005261.2-201ENST00000593427 4258 ntBASIC4.97□□□□□ -1.61
LMX1BO60663 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC4.96□□□□□ -1.61
LMX1BO60663 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
LMX1BO60663 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.61
LMX1BO60663 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
LMX1BO60663 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
LMX1BO60663 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.61
LMX1BO60663 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
LMX1BO60663 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
LMX1BO60663 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
LMX1BO60663 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LMX1BO60663 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LMX1BO60663 PDZK1P1-202ENST00000425209 1350 ntBASIC4.96□□□□□ -1.62
LMX1BO60663 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
LMX1BO60663 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
LMX1BO60663 OR9K1P-201ENST00000326513 941 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms