Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CR383656.1-201ENST00000484916 377 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AL049874.2-201ENST00000492636 288 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 RN7SL447P-201ENST00000494711 245 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AC138832.1-201ENST00000522871 556 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AC127381.1-201ENST00000555979 939 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AL021368.1-201ENST00000607490 540 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AC118658.2-201ENST00000618697 459 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AC233968.1-201ENST00000611212 1300 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.63□□□□□ -1.51
SIX2Q9NPC8 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.63□□□□□ -1.51
SIX2Q9NPC8 KARSP1-201ENST00000451871 1752 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 OR9K1P-201ENST00000326513 941 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 NPM1P37-201ENST00000403105 874 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 U3.32-201ENST00000408116 212 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 RNA5SP178-201ENST00000410380 128 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 MARK2P12-201ENST00000420129 585 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AC015864.1-201ENST00000496512 544 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AC008833.1-201ENST00000611633 691 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AC016911.1-201ENST00000613297 452 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AC026124.2-201ENST00000621847 656 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 AP005432.1-201ENST00000580891 3485 ntBASIC5.62□□□□□ -1.51
SIX2Q9NPC8 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.62□□□□□ -1.51
SIX2Q9NPC8 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 RN7SKP81-201ENST00000365603 331 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC009804.1-201ENST00000400949 179 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 FAM204CP-201ENST00000424489 642 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 GAPDHP58-201ENST00000438477 1006 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC007386.1-201ENST00000455212 582 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC235565.1-201ENST00000456962 1325 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 SETP20-201ENST00000457046 852 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AL133445.1-201ENST00000467051 452 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 ENPP7P11-201ENST00000505915 627 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC087272.1-201ENST00000523624 533 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC069307.1-201ENST00000602820 447 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC018765.1-201ENST00000623357 3446 ntBASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SIX2Q9NPC8 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms