Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL139039.2-201ENST00000407436 479 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 RN7SKP273-201ENST00000411392 314 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AL390774.1-201ENST00000411924 246 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC096644.3-201ENST00000416788 338 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AL133325.1-201ENST00000421090 382 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 RPL34P27-201ENST00000428810 349 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 RPS26P41-201ENST00000450370 284 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC147055.3-201ENST00000510547 851 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 IGLV3-24-201ENST00000517477 197 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 HMGN2P6-201ENST00000551091 273 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 MIR4311-201ENST00000580794 100 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC025574.2-201ENST00000615621 514 ntBASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC3Q9BQI4 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 MUC2-202ENST00000613187 4845 ntBASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC3Q9BQI4 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AL589826.1-201ENST00000340697 249 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC005294.1-201ENST00000355509 281 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AL645927.1-201ENST00000396783 406 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 MTND3P20-201ENST00000407663 186 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AL392003.1-201ENST00000434394 243 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 OR52B5P-201ENST00000435337 951 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 FAR2P1-206ENST00000449736 709 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 RN7SL329P-201ENST00000467740 299 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 OR52A4P-202ENST00000481634 799 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 RN7SL447P-201ENST00000494711 245 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 PMS2P3-207ENST00000529061 717 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC139697.1-201ENST00000548429 745 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC126177.5-201ENST00000549599 178 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 NPM1P5-201ENST00000557228 838 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC009268.1-201ENST00000561352 1203 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC021422.1-201ENST00000621212 473 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 OR52B5P-202ENST00000641118 1110 ntBASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC3Q9BQI4 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC144833.1-201ENST00000567953 4089 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC093909.5-201ENST00000621839 1799 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms