Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 LSM3P2-201ENST00000551246 273 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 MRPS21P7-201ENST00000566937 238 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 MIR4505-201ENST00000582238 73 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 RNA5SP440-201ENST00000612665 119 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 AL691477.1-201ENST00000624398 162 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC099654.6-201ENST00000636487 512 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 CDY11P-201ENST00000447168 1651 ntBASIC4.13□□□□□ -1.75
HLA-DMBP28068 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DMBP28068 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DMBP28068 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 PCAT14-202ENST00000627127 3935 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 SOCS5P3-201ENST00000425115 1576 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AL662874.1-201ENST00000426065 230 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 AL121776.1-201ENST00000429337 372 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 OR6D1P-201ENST00000436165 939 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 EEF1B2P6-201ENST00000445713 673 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 OR11I1P-201ENST00000486033 954 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC109464.1-201ENST00000511091 819 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC021733.2-201ENST00000518830 497 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 SETP1-201ENST00000556014 845 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 MIR7853-201ENST00000584820 132 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 FO393422.1-201ENST00000603908 708 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC109309.2-201ENST00000612597 332 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 AL139407.1-201ENST00000613826 1175 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 FRG1EP-201ENST00000634469 770 ntBASIC4.12□□□□□ -1.75
HLA-DMBP28068 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DMBP28068 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DMBP28068 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 RNA5SP241-201ENST00000391326 114 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 AC005522.1-201ENST00000395416 346 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 RNA5SP296-201ENST00000410523 111 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DMBP28068 Z84478.1-201ENST00000438230 1219 ntBASIC4.11□□□□□ -1.75
HLA-DMBP28068 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DMBP28068 AP000281.1-201ENST00000444036 316 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms