Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL592221.1-201ENST00000605266 382 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC007349.4-201ENST00000608114 532 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 MIR6070-201ENST00000613967 103 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC104985.2-201ENST00000620598 500 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 METTL8-218ENST00000638989 876 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 METTL8-219ENST00000640734 726 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AL049634.1-201ENST00000453770 1720 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC023490.2-201ENST00000359859 470 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 RNU1-5P-201ENST00000362684 144 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 RNU5B-4P-201ENST00000363508 111 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC092634.1-201ENST00000366505 199 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 GLUD1P9-201ENST00000420997 1173 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 DPRXP1-201ENST00000426312 460 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 USP9YP22-201ENST00000438971 294 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC079922.1-201ENST00000443291 359 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC006326.1-201ENST00000445465 787 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC104978.1-201ENST00000449387 391 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL096803.2-201ENST00000450032 677 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC103563.5-201ENST00000455643 364 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 RPL7P40-201ENST00000481703 745 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 RN7SL267P-201ENST00000485107 261 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 RPL5P33-201ENST00000487833 905 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC018639.1-201ENST00000492994 442 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 RPL24-206ENST00000495401 478 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC009567.2-201ENST00000502989 349 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 NREP-223ENST00000515855 801 ntTSL 4 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC244502.2-201ENST00000543361 851 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL512347.1-201ENST00000566420 503 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 RPL29P33-201ENST00000587474 316 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL031985.2-201ENST00000600955 480 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL109618.2-201ENST00000605527 211 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 PART1_2.1-201ENST00000612397 250 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 MIR6085-201ENST00000618314 110 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC091931.1-201ENST00000623488 728 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 DMD-228ENST00000541735 7080 ntTSL 5 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 ANKRD20A10P-201ENST00000457591 1515 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 MTND5P24-201ENST00000438892 1767 ntBASIC7.31□□□□□ -1.24
CCDC39Q9UFE4 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC7.3□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms