Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AC131971.1-201ENST00000332881 1482 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 PWAR1-201ENST00000624188 2414 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 RNA5SP234-201ENST00000363916 119 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 RNU6-729P-201ENST00000384399 107 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 CYCSP12-201ENST00000437729 300 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 BX679664.2-201ENST00000439282 283 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AP000859.1-201ENST00000525536 307 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AL513327.3-201ENST00000602618 469 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 AL445222.1-201ENST00000607259 628 ntBASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.65□□□□□ -1.5
HDDC3Q8N4P3 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HDDC3Q8N4P3 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC025470.1-201ENST00000510053 2032 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RNU6-249P-201ENST00000363016 102 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RN7SKP103-201ENST00000363848 320 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC021876.1-201ENST00000425959 359 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 CYCSP6-201ENST00000434498 302 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 MTND4LP12-201ENST00000448237 295 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RPL7P45-201ENST00000455851 743 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RN7SL860P-201ENST00000473738 223 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RPS21P4-201ENST00000487122 248 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RN7SL808P-201ENST00000496066 299 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC072052.1-201ENST00000496556 306 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 snoU109.5-201ENST00000516231 132 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 IGLV3-24-201ENST00000517477 197 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AL163952.1-202ENST00000569625 600 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 RN7SL708P-201ENST00000580952 299 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AL133481.2-203ENST00000607558 139 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 MIR6820-201ENST00000611508 62 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AC136428.4-201ENST00000634254 1155 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 AP001153.1-201ENST00000641024 338 ntBASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDDC3Q8N4P3 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms