Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC003985.2-201ENST00000562268 1669 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 RNA5SP500-201ENST00000364486 119 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 VN1R54P-201ENST00000435210 1049 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 SDR42E1P3-201ENST00000438345 502 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC006466.1-201ENST00000438721 289 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AL390119.1-201ENST00000440329 312 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 VN1R48P-201ENST00000448149 1036 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AP002345.1-201ENST00000456493 928 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AL022319.1-201ENST00000458183 1167 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 RPL7P39-201ENST00000481157 744 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 RPS4XP1-201ENST00000482189 787 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 SSR3-208ENST00000496050 579 ntTSL 4 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC024558.1-201ENST00000505008 528 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 FABP5P6-201ENST00000510588 409 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC027176.2-201ENST00000559166 746 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 MIR378J-201ENST00000611988 109 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC008115.3-201ENST00000614874 549 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AP000346.3-201ENST00000622821 210 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC000095.2-202ENST00000637415 154 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC092451.3-201ENST00000625067 1343 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 GNL2P1-201ENST00000451274 2190 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC245100.2-201ENST00000454544 1679 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 RNA5SP375-201ENST00000362975 119 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AL589647.1-201ENST00000402485 466 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 DSTNP5-201ENST00000427921 523 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC023141.6-201ENST00000429418 337 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC046176.1-201ENST00000435260 1170 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 CEACAMP9-201ENST00000442990 513 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC079922.1-201ENST00000443291 359 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 CEACAMP7-201ENST00000444105 496 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 MTND2P30-201ENST00000456663 382 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC104629.2-201ENST00000468627 598 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 RPL35AP19-201ENST00000469425 329 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC079841.1-201ENST00000481228 950 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 RN7SL97P-201ENST00000486780 299 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC007686.1-201ENST00000488511 463 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC025768.1-201ENST00000510057 267 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 HMGB1P47-201ENST00000511281 589 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 OR4R2P-201ENST00000530815 597 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 OR4A40P-201ENST00000533878 948 ntBASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.63□□□□□ -1.51
COL28A1Q2UY09 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms