Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 AC073544.1-201ENST00000600110 1595 ntBASIC6.41□□□□□ -1.38
RNF4P78317 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 Y_RNA.18-201ENST00000362461 102 ntBASIC6.41□□□□□ -1.38
RNF4P78317 SUGT1P2-201ENST00000379452 992 ntBASIC6.41□□□□□ -1.38
RNF4P78317 RNY3P10-201ENST00000384764 102 ntBASIC6.41□□□□□ -1.38
RNF4P78317 MIR1204-201ENST00000408388 67 ntBASIC6.41□□□□□ -1.38
RNF4P78317 RPLP1P10-201ENST00000413972 339 ntBASIC6.41□□□□□ -1.38
RNF4P78317 NME1P1-201ENST00000420914 382 ntBASIC6.41□□□□□ -1.38
RNF4P78317 RNGTTP1-201ENST00000420965 728 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC6.41□□□□□ -1.38
RNF4P78317 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 CDY14P-201ENST00000431260 1014 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 FTH1P16-201ENST00000435241 552 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.41□□□□□ -1.38
RNF4P78317 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.41□□□□□ -1.38
RNF4P78317 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 GOT2P2-201ENST00000450663 1251 ntBASIC6.41□□□□□ -1.38
RNF4P78317 CDY23P-201ENST00000451661 1014 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 PDCL3P4-201ENST00000489621 720 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
RNF4P78317 RPL37P25-201ENST00000507308 276 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC6.41□□□□□ -1.38
RNF4P78317 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 RNU6-1004P-201ENST00000516584 111 ntBASIC6.41□□□□□ -1.38
RNF4P78317 OR5D2P-201ENST00000524390 911 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 MIR4666A-201ENST00000580160 79 ntBASIC6.41□□□□□ -1.38
RNF4P78317 OR4K7P-201ENST00000580232 945 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AC009237.13-201ENST00000603193 276 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AC009237.12-201ENST00000604755 742 ntBASIC6.41□□□□□ -1.38
RNF4P78317 NDUFA8P1-201ENST00000605525 367 ntBASIC6.41□□□□□ -1.38
RNF4P78317 MRPL57P3-201ENST00000619218 176 ntBASIC6.41□□□□□ -1.38
RNF4P78317 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.41□□□□□ -1.38
RNF4P78317 AL356266.1-201ENST00000623311 483 ntBASIC6.41□□□□□ -1.38
RNF4P78317 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 SEPT14P19-203ENST00000633205 211 ntBASIC6.41□□□□□ -1.38
RNF4P78317 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.41□□□□□ -1.38
RNF4P78317 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC6.41□□□□□ -1.38
RNF4P78317 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.41□□□□□ -1.38
RNF4P78317 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
RNF4P78317 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.41□□□□□ -1.38
RNF4P78317 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC6.41□□□□□ -1.38
RNF4P78317 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.4□□□□□ -1.38
RNF4P78317 ATP8A2P3-201ENST00000426792 1536 ntBASIC6.4□□□□□ -1.38
RNF4P78317 ZNF733P-202ENST00000444809 1573 ntBASIC6.4□□□□□ -1.38
RNF4P78317 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.4□□□□□ -1.38
RNF4P78317 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.4□□□□□ -1.38
RNF4P78317 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
RNF4P78317 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
RNF4P78317 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 SNORA4.1-201ENST00000364263 144 ntBASIC6.4□□□□□ -1.38
RNF4P78317 RN7SKP189-201ENST00000365042 330 ntBASIC6.4□□□□□ -1.38
RNF4P78317 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 MIR199B-201ENST00000384849 110 ntBASIC6.4□□□□□ -1.38
RNF4P78317 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
RNF4P78317 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
RNF4P78317 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 RPL7P58-201ENST00000402913 758 ntBASIC6.4□□□□□ -1.38
RNF4P78317 RN7SKP59-201ENST00000410520 314 ntBASIC6.4□□□□□ -1.38
RNF4P78317 TCEA1P4-201ENST00000415066 844 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC6.4□□□□□ -1.38
RNF4P78317 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 AC010975.2-201ENST00000427781 588 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC6.4□□□□□ -1.38
RNF4P78317 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC6.4□□□□□ -1.38
RNF4P78317 RN7SL390P-201ENST00000470634 284 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AC022730.1-201ENST00000473114 568 ntBASIC6.4□□□□□ -1.38
RNF4P78317 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
RNF4P78317 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms