Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC8.63□□□□□ -1.03
CUX1P39880 RPL32P3-201ENST00000359025 275 ntBASIC8.63□□□□□ -1.03
CUX1P39880 SNORA62-201ENST00000365493 153 ntBASIC8.63□□□□□ -1.03
CUX1P39880 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
CUX1P39880 GTF2IP5-201ENST00000414608 731 ntBASIC8.63□□□□□ -1.03
CUX1P39880 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC8.63□□□□□ -1.03
CUX1P39880 DNAJC19P7-201ENST00000428811 344 ntBASIC8.63□□□□□ -1.03
CUX1P39880 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC8.63□□□□□ -1.03
CUX1P39880 AC020779.1-201ENST00000478757 796 ntBASIC8.63□□□□□ -1.03
CUX1P39880 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC8.63□□□□□ -1.03
CUX1P39880 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC8.63□□□□□ -1.03
CUX1P39880 AC136624.4-201ENST00000573044 370 ntBASIC8.63□□□□□ -1.03
CUX1P39880 AC069542.2-201ENST00000624816 216 ntBASIC8.63□□□□□ -1.03
CUX1P39880 AC104964.3-201ENST00000606115 2860 ntBASIC8.63□□□□□ -1.03
CUX1P39880 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
CUX1P39880 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
CUX1P39880 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
CUX1P39880 AC016251.2-201ENST00000623393 3089 ntBASIC8.62□□□□□ -1.03
CUX1P39880 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
CUX1P39880 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
CUX1P39880 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC8.62□□□□□ -1.03
CUX1P39880 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC8.62□□□□□ -1.03
CUX1P39880 RPS27AP7-201ENST00000422792 455 ntBASIC8.62□□□□□ -1.03
CUX1P39880 AC093720.1-201ENST00000505681 714 ntBASIC8.62□□□□□ -1.03
CUX1P39880 SEPT10P1-201ENST00000517342 1162 ntBASIC8.62□□□□□ -1.03
CUX1P39880 AC130364.2-201ENST00000528639 604 ntBASIC8.62□□□□□ -1.03
CUX1P39880 AC105129.1-201ENST00000560250 297 ntBASIC8.62□□□□□ -1.03
CUX1P39880 AC098935.2-201ENST00000604222 466 ntBASIC8.62□□□□□ -1.03
CUX1P39880 AC011626.1-201ENST00000604710 562 ntBASIC8.62□□□□□ -1.03
CUX1P39880 AC012414.7-202ENST00000622705 1090 ntBASIC8.62□□□□□ -1.03
CUX1P39880 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
CUX1P39880 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
CUX1P39880 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
CUX1P39880 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
CUX1P39880 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
CUX1P39880 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
CUX1P39880 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC8.61□□□□□ -1.03
CUX1P39880 MIR589-201ENST00000385238 99 ntBASIC8.61□□□□□ -1.03
CUX1P39880 RPS16P5-201ENST00000406501 404 ntBASIC8.61□□□□□ -1.03
CUX1P39880 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC8.61□□□□□ -1.03
CUX1P39880 AL161722.1-201ENST00000446972 1032 ntBASIC8.61□□□□□ -1.03
CUX1P39880 TCEA1P1-201ENST00000449716 880 ntBASIC8.61□□□□□ -1.03
CUX1P39880 NUTF2P7-201ENST00000453086 375 ntBASIC8.61□□□□□ -1.03
CUX1P39880 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC8.61□□□□□ -1.03
CUX1P39880 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC8.61□□□□□ -1.03
CUX1P39880 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
CUX1P39880 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
CUX1P39880 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
CUX1P39880 AC012213.2-201ENST00000562917 4597 ntBASIC8.61□□□□□ -1.03
CUX1P39880 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC8.61□□□□□ -1.03
CUX1P39880 SAMMSON-226ENST00000642089 1582 ntBASIC8.61□□□□□ -1.03
CUX1P39880 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC8.61□□□□□ -1.03
CUX1P39880 AC063976.2-201ENST00000425667 3556 ntBASIC8.61□□□□□ -1.03
CUX1P39880 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
CUX1P39880 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
CUX1P39880 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC8.61□□□□□ -1.03
CUX1P39880 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC8.6□□□□□ -1.03
CUX1P39880 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
CUX1P39880 OR5M12P-201ENST00000423388 929 ntBASIC8.6□□□□□ -1.03
CUX1P39880 CNOT7P1-201ENST00000429006 852 ntBASIC8.6□□□□□ -1.03
CUX1P39880 TXNP5-201ENST00000441043 315 ntBASIC8.6□□□□□ -1.03
CUX1P39880 AC234781.3-201ENST00000452540 973 ntBASIC8.6□□□□□ -1.03
CUX1P39880 RPL12P20-201ENST00000475538 479 ntBASIC8.6□□□□□ -1.03
CUX1P39880 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC8.6□□□□□ -1.03
CUX1P39880 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
CUX1P39880 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC8.6□□□□□ -1.03
CUX1P39880 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC8.6□□□□□ -1.03
CUX1P39880 NMNAT1P1-201ENST00000554095 876 ntBASIC8.6□□□□□ -1.03
CUX1P39880 AC233699.1-201ENST00000569955 1168 ntBASIC8.6□□□□□ -1.03
CUX1P39880 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC8.6□□□□□ -1.03
CUX1P39880 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
CUX1P39880 AC009704.2-201ENST00000618739 483 ntBASIC8.6□□□□□ -1.03
CUX1P39880 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
CUX1P39880 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
CUX1P39880 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC8.6□□□□□ -1.03
CUX1P39880 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC8.6□□□□□ -1.03
CUX1P39880 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
CUX1P39880 AL117378.2-201ENST00000622916 1337 ntBASIC8.6□□□□□ -1.03
CUX1P39880 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC8.6□□□□□ -1.03
CUX1P39880 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC8.6□□□□□ -1.03
CUX1P39880 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC8.6□□□□□ -1.03
CUX1P39880 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
CUX1P39880 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC8.6□□□□□ -1.03
CUX1P39880 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC8.6□□□□□ -1.03
CUX1P39880 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC8.6□□□□□ -1.03
CUX1P39880 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC8.6□□□□□ -1.03
CUX1P39880 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
CUX1P39880 OR9G4-201ENST00000302957 984 ntBASIC8.59□□□□□ -1.03
CUX1P39880 MAX-203ENST00000341653 330 ntTSL 2 BASIC8.59□□□□□ -1.03
CUX1P39880 SNORA70.2-201ENST00000364506 135 ntBASIC8.59□□□□□ -1.03
CUX1P39880 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 RSU1P3-201ENST00000412878 835 ntBASIC8.59□□□□□ -1.03
CUX1P39880 AURKAPS2-201ENST00000454983 333 ntBASIC8.59□□□□□ -1.03
CUX1P39880 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC8.59□□□□□ -1.03
CUX1P39880 AC020910.3-201ENST00000603701 874 ntBASIC8.59□□□□□ -1.03
CUX1P39880 AL139124.1-201ENST00000609123 421 ntBASIC8.59□□□□□ -1.03
CUX1P39880 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
CUX1P39880 DMD-222ENST00000474231 5209 ntTSL 5 BASIC8.59□□□□□ -1.03
CUX1P39880 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
CUX1P39880 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC8.59□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 125 ms