Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA9P31269 CHMP1B2P-201ENST00000399581 597 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
HOXA9P31269 RPL7P56-201ENST00000429441 717 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA9P31269 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA9P31269 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA9P31269 AC090114.3-201ENST00000479267 829 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 RPL7P40-201ENST00000481703 745 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA9P31269 RNA5SP373-201ENST00000517271 95 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA9P31269 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.64□□□□□ -1.51
HOXA9P31269 AP004607.2-201ENST00000533949 322 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 PCNPP1-201ENST00000552501 511 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.64□□□□□ -1.51
HOXA9P31269 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA9P31269 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA9P31269 MIR4436B2-201ENST00000581415 91 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 AC011840.5-201ENST00000582125 771 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 RN7SL356P-201ENST00000582228 248 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 MIR4436B1-201ENST00000583272 91 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
HOXA9P31269 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
HOXA9P31269 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA9P31269 CASC19-260ENST00000641828 2001 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 PANDAR-201ENST00000629595 1506 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 UGT2B24P-201ENST00000514441 1597 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA9P31269 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA9P31269 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA9P31269 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA9P31269 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA9P31269 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA9P31269 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA9P31269 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA9P31269 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA9P31269 RNU4-4P-201ENST00000364588 130 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 DBIP1-201ENST00000401435 260 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 NUDT19P3-201ENST00000404698 555 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 RN7SKP126-201ENST00000411143 300 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 AC211486.3-201ENST00000412694 621 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 RPSAP35-201ENST00000413753 818 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 AL354868.1-201ENST00000417077 482 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 H2AFZP6-201ENST00000444403 394 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA9P31269 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.63□□□□□ -1.51
HOXA9P31269 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.63□□□□□ -1.51
HOXA9P31269 AC060780.2-201ENST00000589047 198 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 AC104785.1-201ENST00000603220 588 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA9P31269 AL078621.3-201ENST00000623707 2042 ntBASIC5.63□□□□□ -1.51
HOXA9P31269 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
HOXA9P31269 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXA9P31269 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HOXA9P31269 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA9P31269 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA9P31269 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HOXA9P31269 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA9P31269 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HOXA9P31269 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
HOXA9P31269 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 AL355488.2-201ENST00000609909 2850 ntBASIC5.62□□□□□ -1.51
HOXA9P31269 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 OR4K12P-201ENST00000406538 961 ntBASIC5.62□□□□□ -1.51
HOXA9P31269 RN7SKP216-201ENST00000411050 312 ntBASIC5.62□□□□□ -1.51
HOXA9P31269 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA9P31269 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA9P31269 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 AC092647.3-201ENST00000443044 633 ntBASIC5.62□□□□□ -1.51
HOXA9P31269 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.62□□□□□ -1.51
HOXA9P31269 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA9P31269 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA9P31269 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.62□□□□□ -1.51
HOXA9P31269 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA9P31269 AC018809.2-201ENST00000602436 3823 ntBASIC5.62□□□□□ -1.51
HOXA9P31269 AC005084.1-201ENST00000605160 304 ntBASIC5.62□□□□□ -1.51
HOXA9P31269 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.62□□□□□ -1.51
HOXA9P31269 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 MTCO1P7-201ENST00000419523 1542 ntBASIC5.62□□□□□ -1.51
HOXA9P31269 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
HOXA9P31269 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
HOXA9P31269 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 AC144833.1-201ENST00000567953 4089 ntBASIC5.62□□□□□ -1.51
HOXA9P31269 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA9P31269 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms