Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RPL7AP52-201ENST00000458096 790 ntBASIC6.13□□□□□ -1.43
BDNFP23560 RNU1-88P-201ENST00000459274 128 ntBASIC6.13□□□□□ -1.43
BDNFP23560 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
BDNFP23560 RN7SL174P-201ENST00000475578 289 ntBASIC6.13□□□□□ -1.43
BDNFP23560 AC022215.1-201ENST00000481770 362 ntBASIC6.13□□□□□ -1.43
BDNFP23560 RPL32P33-201ENST00000487023 394 ntBASIC6.13□□□□□ -1.43
BDNFP23560 AC139365.2-201ENST00000517972 253 ntBASIC6.13□□□□□ -1.43
BDNFP23560 AP001804.1-201ENST00000526868 919 ntBASIC6.13□□□□□ -1.43
BDNFP23560 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.13□□□□□ -1.43
BDNFP23560 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.13□□□□□ -1.43
BDNFP23560 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC6.13□□□□□ -1.43
BDNFP23560 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.13□□□□□ -1.43
BDNFP23560 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC6.13□□□□□ -1.43
BDNFP23560 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.13□□□□□ -1.43
BDNFP23560 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC6.13□□□□□ -1.43
BDNFP23560 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC6.13□□□□□ -1.43
BDNFP23560 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.13□□□□□ -1.43
BDNFP23560 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.13□□□□□ -1.43
BDNFP23560 AC011445.2-201ENST00000599274 173 ntBASIC6.13□□□□□ -1.43
BDNFP23560 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
BDNFP23560 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.13□□□□□ -1.43
BDNFP23560 AC069234.4-201ENST00000621276 412 ntBASIC6.13□□□□□ -1.43
BDNFP23560 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC6.13□□□□□ -1.43
BDNFP23560 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.13□□□□□ -1.43
BDNFP23560 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
BDNFP23560 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
BDNFP23560 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
BDNFP23560 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.13□□□□□ -1.43
BDNFP23560 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
BDNFP23560 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
BDNFP23560 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
BDNFP23560 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.12□□□□□ -1.43
BDNFP23560 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 AL591135.1-201ENST00000401578 5914 ntBASIC6.12□□□□□ -1.43
BDNFP23560 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 RNU4-39P-201ENST00000362455 127 ntBASIC6.12□□□□□ -1.43
BDNFP23560 RNA5SP242-201ENST00000364171 118 ntBASIC6.12□□□□□ -1.43
BDNFP23560 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
BDNFP23560 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.12□□□□□ -1.43
BDNFP23560 RN7SKP206-201ENST00000410823 293 ntBASIC6.12□□□□□ -1.43
BDNFP23560 RN7SKP286-201ENST00000410894 299 ntBASIC6.12□□□□□ -1.43
BDNFP23560 RPL34P3-201ENST00000421454 338 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.12□□□□□ -1.43
BDNFP23560 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.12□□□□□ -1.43
BDNFP23560 AL662874.1-201ENST00000426065 230 ntBASIC6.12□□□□□ -1.43
BDNFP23560 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.12□□□□□ -1.43
BDNFP23560 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.12□□□□□ -1.43
BDNFP23560 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 AP000281.1-201ENST00000444036 316 ntBASIC6.12□□□□□ -1.43
BDNFP23560 EIF4A1P11-201ENST00000451239 222 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AC004129.2-201ENST00000457229 287 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AC025181.1-201ENST00000477507 416 ntBASIC6.12□□□□□ -1.43
BDNFP23560 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.12□□□□□ -1.43
BDNFP23560 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.12□□□□□ -1.43
BDNFP23560 AC009120.1-201ENST00000493458 473 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AC138866.2-201ENST00000508650 584 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AC109481.1-201ENST00000509173 282 ntBASIC6.12□□□□□ -1.43
BDNFP23560 TOMM22P4-201ENST00000511318 336 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC6.12□□□□□ -1.43
BDNFP23560 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.12□□□□□ -1.43
BDNFP23560 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.12□□□□□ -1.43
BDNFP23560 AC090424.1-201ENST00000535243 736 ntBASIC6.12□□□□□ -1.43
BDNFP23560 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC6.12□□□□□ -1.43
BDNFP23560 BTBD10P1-201ENST00000549824 1352 ntBASIC6.12□□□□□ -1.43
BDNFP23560 DPPA2P4-201ENST00000563717 878 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AC010547.6-201ENST00000571789 193 ntBASIC6.12□□□□□ -1.43
BDNFP23560 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.12□□□□□ -1.43
BDNFP23560 RNA5SP440-201ENST00000612665 119 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AC116447.1-201ENST00000613153 453 ntBASIC6.12□□□□□ -1.43
BDNFP23560 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
BDNFP23560 AC011472.4-201ENST00000615848 491 ntBASIC6.12□□□□□ -1.43
BDNFP23560 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC6.12□□□□□ -1.43
BDNFP23560 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.12□□□□□ -1.43
BDNFP23560 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC6.12□□□□□ -1.43
BDNFP23560 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
BDNFP23560 AC015908.5-201ENST00000623289 343 ntBASIC6.12□□□□□ -1.43
BDNFP23560 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
BDNFP23560 MIR4302-201ENST00000638058 60 ntBASIC6.12□□□□□ -1.43
BDNFP23560 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
BDNFP23560 AC020656.2-201ENST00000613291 5309 ntBASIC6.12□□□□□ -1.43
BDNFP23560 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.12□□□□□ -1.43
BDNFP23560 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
BDNFP23560 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BDNFP23560 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
BDNFP23560 AC005224.3-201ENST00000584683 2140 ntBASIC6.11□□□□□ -1.43
BDNFP23560 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
BDNFP23560 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
BDNFP23560 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
BDNFP23560 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
BDNFP23560 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
BDNFP23560 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
BDNFP23560 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
BDNFP23560 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms