Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC013410.1-201ENST00000436223 1232 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 MTATP6P1-201ENST00000514057 681 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC027544.3-201ENST00000535082 757 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 SUGT1P3-202ENST00000604259 383 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC005252.1-201ENST00000604518 1063 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC092944.2-201ENST00000605443 889 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 MIR6861-201ENST00000618657 64 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC006210.2-201ENST00000367074 1545 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 AC027279.1-201ENST00000568885 4284 ntBASIC5.31□□□□□ -1.56
TREX1Q9NSU2 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
TREX1Q9NSU2 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 CASC19-248ENST00000641674 1356 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AC023421.1-201ENST00000590535 1785 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 PEX12P1-201ENST00000400284 1048 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 RPL7P45-201ENST00000455851 743 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AC090602.1-201ENST00000469695 252 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 RPEP1-201ENST00000504507 658 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 RNA5SP230-201ENST00000517039 122 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 HMGB1P40-201ENST00000525121 540 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 PRPF19P1-201ENST00000584766 898 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AC008814.1-201ENST00000603797 406 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AC009597.2-201ENST00000604659 592 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 Z95327.3-201ENST00000610385 572 ntBASIC5.3□□□□□ -1.56
TREX1Q9NSU2 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
TREX1Q9NSU2 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.29□□□□□ -1.56
TREX1Q9NSU2 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 RNA5SP187-201ENST00000384400 119 ntBASIC5.29□□□□□ -1.56
TREX1Q9NSU2 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 SNORA17A-201ENST00000391185 133 ntBASIC5.29□□□□□ -1.56
TREX1Q9NSU2 AL390774.1-201ENST00000411924 246 ntBASIC5.29□□□□□ -1.56
TREX1Q9NSU2 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 CLUHP1-201ENST00000435012 1190 ntBASIC5.29□□□□□ -1.56
TREX1Q9NSU2 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.29□□□□□ -1.56
TREX1Q9NSU2 AC023141.9-201ENST00000458734 412 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms