Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 RNU6-819P-201ENST00000364116 107 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 RNA5SP91-201ENST00000390902 119 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 DHFRP5-201ENST00000406944 564 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC006455.6-201ENST00000426192 893 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC093270.2-201ENST00000486157 792 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 KCTD9P6-201ENST00000522306 950 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AP000619.2-201ENST00000546014 969 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 VN1R81P-201ENST00000602085 372 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 MIR7155-201ENST00000615925 56 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AC118658.2-201ENST00000618697 459 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 CASC19-222ENST00000641321 1173 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 LINC01963-201ENST00000562038 3148 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 NAMPTP1-201ENST00000440465 2514 ntBASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 RNU6-670P-201ENST00000364312 104 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AL121977.1-201ENST00000401636 979 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 RPS27P18-201ENST00000431701 247 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 EEF1B2P5-201ENST00000444820 548 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AC073072.2-201ENST00000447425 348 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 REG1CP-206ENST00000447469 496 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AC079841.1-201ENST00000481228 950 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AC117525.1-201ENST00000515228 503 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 SNORA70.17-201ENST00000516449 133 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 NPM1P42-201ENST00000560329 862 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AC007342.5-201ENST00000571340 2142 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 HIRAP1-201ENST00000605318 787 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 RPSAP73-201ENST00000614820 330 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 AL118522.2-201ENST00000616045 615 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC3Q9BQI4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AC073429.2-201ENST00000569694 1444 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 RNA5SP183-201ENST00000362452 119 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 RNA5SP507-201ENST00000363603 121 ntBASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC3Q9BQI4 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms