Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL583832.1-201ENST00000603227 784 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AC004492.1-201ENST00000607036 742 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.26□□□□□ -1.41
USP39Q53GS9 AC104985.3-201ENST00000623479 597 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AL049767.1-202ENST00000637826 242 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.26□□□□□ -1.41
USP39Q53GS9 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.26□□□□□ -1.41
USP39Q53GS9 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC015689.2-201ENST00000528172 1738 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 RNFT1P3-201ENST00000340898 1052 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AMELX-201ENST00000348912 737 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 RNA5SP242-201ENST00000364171 118 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AL035660.1-201ENST00000422041 222 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AJ239321.1-201ENST00000424255 564 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 HIGD1AP4-201ENST00000430194 280 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 GAPDHP75-201ENST00000433910 943 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC092447.2-201ENST00000435487 669 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 MTND4P25-201ENST00000441039 533 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 MTCO1P53-201ENST00000441633 699 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC007000.2-201ENST00000442564 487 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
USP39Q53GS9 HMGN1P36-201ENST00000446623 298 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AL157884.3-201ENST00000448273 1184 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 AP006222.1-205ENST00000450734 457 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC092865.4-201ENST00000477936 615 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC118282.2-201ENST00000508739 374 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC114781.3-201ENST00000512083 142 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 RNU5A-4P-201ENST00000516588 111 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AP005639.1-201ENST00000526939 192 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC130364.2-201ENST00000528639 604 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC090022.1-201ENST00000546569 311 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AL121579.2-201ENST00000555466 590 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC090286.3-201ENST00000573133 187 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 AL022067.1-201ENST00000602426 454 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AL353778.1-201ENST00000603149 408 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC080078.2-201ENST00000603766 501 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AL353600.1-201ENST00000608148 251 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AC084036.1-201ENST00000609190 508 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AL512427.1-201ENST00000618593 349 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC004836.1-201ENST00000623032 634 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 AC006511.3-201ENST00000624929 1783 ntBASIC6.25□□□□□ -1.41
USP39Q53GS9 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
USP39Q53GS9 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
USP39Q53GS9 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
USP39Q53GS9 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms