Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC092692.1-201ENST00000623625 2595 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 BX284613.1-201ENST00000452221 1641 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 HDAC1P2-201ENST00000453661 1398 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC096921.2-201ENST00000561507 1916 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AL356317.1-201ENST00000396110 1436 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AL355488.2-201ENST00000609909 2850 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 CASC19-260ENST00000641828 2001 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 RNU6-1251P-201ENST00000364502 107 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 RN7SKP17-201ENST00000411242 351 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 RN7SKP273-201ENST00000411392 314 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AL596448.1-201ENST00000415024 392 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AL606490.7-201ENST00000433136 191 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 BUD31P2-201ENST00000449374 300 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 CYCSP53-201ENST00000455540 265 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 RN7SL72P-201ENST00000460697 269 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC073594.1-201ENST00000462065 364 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC091153.1-201ENST00000466297 402 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 RN7SL269P-201ENST00000467795 305 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC090602.1-201ENST00000469695 252 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC090543.1-201ENST00000492168 485 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AP003049.1-201ENST00000529418 457 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 CR383656.14-201ENST00000551951 406 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC125494.2-201ENST00000602431 657 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC135803.1-201ENST00000608748 565 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AL512506.1-201ENST00000613918 449 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC006213.4-201ENST00000616184 634 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AL138960.2-201ENST00000625145 535 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC003992.1-201ENST00000635364 557 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 AC087565.3-203ENST00000641018 837 ntBASIC5.65□□□□□ -1.5
COL28A1Q2UY09 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
COL28A1Q2UY09 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 AL731532.1-201ENST00000623972 4236 ntBASIC5.65□□□□□ -1.51
COL28A1Q2UY09 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 PDZK1P1-202ENST00000425209 1350 ntBASIC5.65□□□□□ -1.51
COL28A1Q2UY09 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.65□□□□□ -1.51
COL28A1Q2UY09 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 AC137056.2-201ENST00000624055 1958 ntBASIC5.64□□□□□ -1.51
COL28A1Q2UY09 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL28A1Q2UY09 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 136.3 ms