Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
BRCA1P38398 RNA5SP191-201ENST00000362585 102 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 SNORA66-201ENST00000384792 133 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 NUDT19P3-201ENST00000404698 555 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.34□□□□□ -1.39
BRCA1P38398 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.34□□□□□ -1.39
BRCA1P38398 AC091180.1-201ENST00000462104 372 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 CYCSP29-201ENST00000533731 318 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.34□□□□□ -1.39
BRCA1P38398 AP003400.3-201ENST00000624904 346 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 AC073869.8-201ENST00000641806 335 ntBASIC6.34□□□□□ -1.39
BRCA1P38398 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
BRCA1P38398 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
BRCA1P38398 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 AL117378.2-201ENST00000622916 1337 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.33□□□□□ -1.4
BRCA1P38398 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.33□□□□□ -1.4
BRCA1P38398 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
BRCA1P38398 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
BRCA1P38398 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC6.33□□□□□ -1.4
BRCA1P38398 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.33□□□□□ -1.4
BRCA1P38398 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.33□□□□□ -1.4
BRCA1P38398 BX323845.1-201ENST00000432417 179 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 USP24P1-201ENST00000433802 779 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC6.33□□□□□ -1.4
BRCA1P38398 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
BRCA1P38398 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.33□□□□□ -1.4
BRCA1P38398 AC079168.1-201ENST00000458741 345 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.33□□□□□ -1.4
BRCA1P38398 IGHVIII-2-1-201ENST00000518843 291 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 AC012339.2-201ENST00000523996 453 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 AP001880.2-201ENST00000538233 448 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 AC105254.2-201ENST00000603636 436 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 AC067959.1-201ENST00000604334 379 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 AC244107.2-201ENST00000611773 76 ntBASIC6.33□□□□□ -1.4
BRCA1P38398 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC6.33□□□□□ -1.4
BRCA1P38398 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.33□□□□□ -1.4
BRCA1P38398 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
BRCA1P38398 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BRCA1P38398 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.33□□□□□ -1.4
BRCA1P38398 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC6.33□□□□□ -1.4
BRCA1P38398 SAMMSON-226ENST00000642089 1582 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.32□□□□□ -1.4
BRCA1P38398 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.32□□□□□ -1.4
BRCA1P38398 snoU13.1-201ENST00000459157 104 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 SNORD125-201ENST00000459538 96 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 OR8G5-201ENST00000524943 1041 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.32□□□□□ -1.4
BRCA1P38398 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 AL020997.2-201ENST00000602607 184 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
BRCA1P38398 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.32□□□□□ -1.4
BRCA1P38398 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 AL359195.2-201ENST00000623657 4412 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.32□□□□□ -1.4
BRCA1P38398 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
BRCA1P38398 LPP-208ENST00000448637 5835 ntTSL 5 BASIC6.32□□□□□ -1.4
BRCA1P38398 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC6.32□□□□□ -1.4
BRCA1P38398 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.32□□□□□ -1.4
BRCA1P38398 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 AL359715.3-201ENST00000569267 2123 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.32□□□□□ -1.4
BRCA1P38398 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 AC011933.2-201ENST00000578539 2790 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.32□□□□□ -1.4
BRCA1P38398 MIR23A-201ENST00000385245 73 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC6.32□□□□□ -1.4
BRCA1P38398 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.32□□□□□ -1.4
BRCA1P38398 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.32□□□□□ -1.4
BRCA1P38398 AC111000.3-201ENST00000508057 576 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 RNA5SP392-201ENST00000516905 112 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.32□□□□□ -1.4
BRCA1P38398 NMNAT1P1-201ENST00000554095 876 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 AC010480.1-201ENST00000624823 684 ntBASIC6.32□□□□□ -1.4
BRCA1P38398 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.32□□□□□ -1.4
BRCA1P38398 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BRCA1P38398 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms