Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SDC1P18827 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
SDC1P18827 ADAM5-202ENST00000399789 1942 ntBASIC5.09□□□□□ -1.59
SDC1P18827 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.09□□□□□ -1.59
SDC1P18827 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SDC1P18827 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SDC1P18827 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.09□□□□□ -1.59
SDC1P18827 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SDC1P18827 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SDC1P18827 AC007618.1-201ENST00000366455 732 ntBASIC5.09□□□□□ -1.59
SDC1P18827 RNA5SP284-201ENST00000384547 118 ntBASIC5.09□□□□□ -1.59
SDC1P18827 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
SDC1P18827 COX5BP7-201ENST00000414780 274 ntBASIC5.09□□□□□ -1.59
SDC1P18827 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 RPL24P2-201ENST00000421023 475 ntBASIC5.09□□□□□ -1.59
SDC1P18827 IPPKP1-201ENST00000422501 768 ntBASIC5.09□□□□□ -1.59
SDC1P18827 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SDC1P18827 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SDC1P18827 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.09□□□□□ -1.59
SDC1P18827 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.09□□□□□ -1.59
SDC1P18827 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SDC1P18827 AC105399.1-202ENST00000447303 205 ntBASIC5.09□□□□□ -1.59
SDC1P18827 NOP56P2-201ENST00000447491 769 ntBASIC5.09□□□□□ -1.59
SDC1P18827 AC084754.1-201ENST00000463466 464 ntBASIC5.09□□□□□ -1.59
SDC1P18827 AC094085.1-201ENST00000468914 584 ntBASIC5.09□□□□□ -1.59
SDC1P18827 AC007998.1-201ENST00000474156 672 ntBASIC5.09□□□□□ -1.59
SDC1P18827 RPL7P41-201ENST00000485823 957 ntBASIC5.09□□□□□ -1.59
SDC1P18827 RN7SL814P-201ENST00000487715 300 ntBASIC5.09□□□□□ -1.59
SDC1P18827 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.09□□□□□ -1.59
SDC1P18827 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 AC022360.1-201ENST00000521058 340 ntBASIC5.09□□□□□ -1.59
SDC1P18827 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC5.09□□□□□ -1.59
SDC1P18827 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.09□□□□□ -1.59
SDC1P18827 AC005341.1-201ENST00000571086 708 ntBASIC5.09□□□□□ -1.59
SDC1P18827 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 OR51C1P-201ENST00000608504 942 ntBASIC5.09□□□□□ -1.59
SDC1P18827 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.09□□□□□ -1.59
SDC1P18827 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
SDC1P18827 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.09□□□□□ -1.6
SDC1P18827 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SDC1P18827 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.09□□□□□ -1.6
SDC1P18827 AL022311.1-201ENST00000623726 19416 ntBASIC5.09□□□□□ -1.6
SDC1P18827 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SDC1P18827 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SDC1P18827 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.08□□□□□ -1.6
SDC1P18827 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 MIR133B-201ENST00000362210 119 ntBASIC5.08□□□□□ -1.6
SDC1P18827 RNA5SP234-201ENST00000363916 119 ntBASIC5.08□□□□□ -1.6
SDC1P18827 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.08□□□□□ -1.6
SDC1P18827 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.08□□□□□ -1.6
SDC1P18827 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.08□□□□□ -1.6
SDC1P18827 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC5.08□□□□□ -1.6
SDC1P18827 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.08□□□□□ -1.6
SDC1P18827 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 AC022133.1-201ENST00000490961 571 ntBASIC5.08□□□□□ -1.6
SDC1P18827 AL049874.2-201ENST00000492636 288 ntBASIC5.08□□□□□ -1.6
SDC1P18827 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.08□□□□□ -1.6
SDC1P18827 RN7SKP70-201ENST00000516655 271 ntBASIC5.08□□□□□ -1.6
SDC1P18827 AC022826.1-201ENST00000519383 805 ntBASIC5.08□□□□□ -1.6
SDC1P18827 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.08□□□□□ -1.6
SDC1P18827 AL359219.2-201ENST00000555184 348 ntBASIC5.08□□□□□ -1.6
SDC1P18827 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.08□□□□□ -1.6
SDC1P18827 MIR1273E-201ENST00000581165 102 ntBASIC5.08□□□□□ -1.6
SDC1P18827 MIR4505-201ENST00000582238 73 ntBASIC5.08□□□□□ -1.6
SDC1P18827 AC010503.3-201ENST00000594355 540 ntBASIC5.08□□□□□ -1.6
SDC1P18827 AC000068.2-201ENST00000608816 460 ntBASIC5.08□□□□□ -1.6
SDC1P18827 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 AC241377.1-201ENST00000619797 406 ntBASIC5.08□□□□□ -1.6
SDC1P18827 MTCO1P1-201ENST00000624263 1081 ntBASIC5.08□□□□□ -1.6
SDC1P18827 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SDC1P18827 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SDC1P18827 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.07□□□□□ -1.6
SDC1P18827 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.07□□□□□ -1.6
SDC1P18827 TRIM51GP-201ENST00000534741 1350 ntBASIC5.07□□□□□ -1.6
SDC1P18827 ICE2P1-201ENST00000512800 1849 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms