Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXA3O43365 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 BCAS2P1-201ENST00000528022 632 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 SNRPCP6-201ENST00000528310 210 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXA3O43365 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC5.47□□□□□ -1.53
HOXA3O43365 AC140063.1-201ENST00000541343 259 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AC007068.2-201ENST00000543168 395 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.47□□□□□ -1.53
HOXA3O43365 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXA3O43365 AC005519.1-201ENST00000554490 601 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AC107958.1-201ENST00000556576 290 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AC121758.1-202ENST00000556917 658 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AC037479.1-201ENST00000558361 625 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 AC092718.4-201ENST00000566639 716 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 AC012435.1-202ENST00000568772 240 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 AC011260.1-201ENST00000578420 472 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 RPL29P33-201ENST00000587474 316 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 BNIP3P4-201ENST00000604946 565 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AP005137.2-201ENST00000609238 400 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AC068726.1-201ENST00000610993 341 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 MIR7109-201ENST00000613748 65 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AL031667.3-201ENST00000620124 655 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 AC004836.1-201ENST00000623032 634 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXA3O43365 U6.107-201ENST00000637108 79 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
HOXA3O43365 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXA3O43365 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC5.47□□□□□ -1.53
HOXA3O43365 AC093297.3-201ENST00000607056 2517 ntBASIC5.47□□□□□ -1.53
HOXA3O43365 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
HOXA3O43365 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 LARS-212ENST00000510191 3737 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXA3O43365 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXA3O43365 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC5.46□□□□□ -1.53
HOXA3O43365 AC007114.2-201ENST00000576014 4281 ntBASIC5.46□□□□□ -1.53
HOXA3O43365 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.46□□□□□ -1.53
HOXA3O43365 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
HOXA3O43365 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
HOXA3O43365 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
HOXA3O43365 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HOXA3O43365 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXA3O43365 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXA3O43365 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 AL137100.1-201ENST00000556703 1620 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXA3O43365 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
HOXA3O43365 RNU6-931P-201ENST00000363850 107 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 RNU4-7P-201ENST00000364758 141 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 RNA5SP85-201ENST00000365378 119 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
HOXA3O43365 RNA5SP474-201ENST00000391234 90 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 RPL5P5-201ENST00000392009 893 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 VDAC2P1-201ENST00000399358 958 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 AC092745.2-202ENST00000411880 369 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXA3O43365 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HOXA3O43365 MTCO2P34-201ENST00000421994 607 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 AL022400.1-201ENST00000423946 935 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 RPL5P34-201ENST00000426545 891 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 DPY19L1P2-201ENST00000426647 915 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXA3O43365 FTH1P16-201ENST00000435241 552 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 GAPDHP37-201ENST00000442317 968 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 RPS26P30-201ENST00000443431 335 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 HMGB1P16-201ENST00000447155 540 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 LAPTM4BP1-201ENST00000447781 690 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXA3O43365 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HOXA3O43365 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXA3O43365 AC021074.2-201ENST00000468434 172 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXA3O43365 AC099340.1-201ENST00000475247 599 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 RPL7P40-201ENST00000481703 745 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXA3O43365 AL024509.2-201ENST00000493462 493 ntBASIC5.46□□□□□ -1.54
HOXA3O43365 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC5.46□□□□□ -1.54
HOXA3O43365 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms