Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AL121776.1-201ENST00000429337 372 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 RPS23P9-201ENST00000448848 438 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 AZGP1P2-201ENST00000454506 345 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 RN7SL583P-201ENST00000475692 287 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC106872.4-201ENST00000510050 523 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 OR8Q1P-201ENST00000526467 655 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC116158.1-201ENST00000560231 2129 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 RNU6-84P-201ENST00000607737 102 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC087821.1-201ENST00000623639 567 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC132068.1-201ENST00000623805 459 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS35Q96QK1 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS35Q96QK1 AC006206.1-201ENST00000544842 3387 ntBASIC5.49□□□□□ -1.53
VPS35Q96QK1 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 RNA5SP132-201ENST00000364725 118 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 Z93019.1-201ENST00000416450 973 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 AL390119.1-201ENST00000440329 312 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 MTCO3P17-201ENST00000443775 513 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 IGBP1P3-201ENST00000447449 1000 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 EIF1P7-201ENST00000487533 337 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 AC111000.6-201ENST00000514471 709 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 AL359219.2-201ENST00000555184 348 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 AL022394.1-201ENST00000606979 292 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 AL356752.1-201ENST00000615844 593 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 AC005618.4-201ENST00000625053 554 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
VPS35Q96QK1 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS35Q96QK1 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.48□□□□□ -1.53
VPS35Q96QK1 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 AL353796.1-201ENST00000561542 3241 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC068870.1-201ENST00000563737 2455 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 RNA5SP234-201ENST00000363916 119 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC007068.1-201ENST00000396690 844 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 MTND4LP21-201ENST00000415303 295 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 AL513325.1-201ENST00000417716 1034 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 TRGV7-201ENST00000427089 353 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 BX276092.6-201ENST00000430476 250 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC012075.1-201ENST00000436549 580 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 MTND6P5-201ENST00000448266 512 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 BX276092.8-201ENST00000455722 250 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms