Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.7□□□□□ -1.5
HDDC3Q8N4P3 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 SYT14P1-202ENST00000600441 1448 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 MIR130A-201ENST00000385274 89 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 RPL35AP24-201ENST00000413846 330 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AL138787.1-202ENST00000437804 898 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 CNOT7P2-201ENST00000441051 832 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 CEACAMP7-201ENST00000444105 496 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AL450023.1-201ENST00000450868 751 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AURKAPS1-201ENST00000451805 1212 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC079841.1-201ENST00000481228 950 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC024558.1-201ENST00000505008 528 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AL121594.2-201ENST00000541658 472 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AP000619.2-201ENST00000546014 969 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC126615.2-201ENST00000553003 515 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 Mico1.1-201ENST00000611698 204 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AL359513.1-201ENST00000614364 557 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC073342.3-201ENST00000624211 193 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 AC015799.1-201ENST00000622996 3122 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 MTCO1P15-201ENST00000529569 1526 ntBASIC5.69□□□□□ -1.5
HDDC3Q8N4P3 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 RN7SKP28-201ENST00000364770 305 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 RNU4-2-201ENST00000365668 141 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 GNG5P2-201ENST00000372054 207 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AL645733.1-201ENST00000402250 217 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 RPL7L1P9-201ENST00000431298 745 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 RPS3AP38-201ENST00000435889 763 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC006335.2-201ENST00000437993 330 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 MEMO1P4-201ENST00000453590 386 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 RPSAP50-201ENST00000481955 852 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC008953.1-201ENST00000497334 318 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 HIGD1AP5-201ENST00000529959 259 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 HNRNPCP1-201ENST00000556181 766 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC018809.2-201ENST00000602436 3823 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 PPATP2-201ENST00000605635 508 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC090510.2-201ENST00000617465 629 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC068870.2-201ENST00000620635 389 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AC132068.1-201ENST00000623805 459 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AP000432.2-201ENST00000624164 2048 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms