Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL512283.1-201ENST00000606756 1384 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 CASC19-248ENST00000641674 1356 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 DDX6P1-205ENST00000441966 1436 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 MIR133A2-201ENST00000347538 102 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 SNORA43.1-201ENST00000364863 140 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 MIR421-201ENST00000365696 85 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AL590762.3-201ENST00000436372 640 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 ZNF619P1-201ENST00000446539 752 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 RPS23P9-201ENST00000448848 438 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 MTND2P25-201ENST00000449028 610 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 CCRL1P1-201ENST00000449542 1053 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AURKAPS1-201ENST00000451805 1212 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 RPS27AP3-201ENST00000453803 454 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 RN7SL547P-201ENST00000490793 290 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AOX3P-204ENST00000491025 2107 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AC006530.1-201ENST00000555980 571 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AL049872.1-201ENST00000556323 322 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AL133247.2-201ENST00000603236 482 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 RNA5SP439-201ENST00000617595 124 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 CU639417.4-201ENST00000623928 207 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AC020978.9-201ENST00000624380 1141 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 AC097372.4-201ENST00000625025 466 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 OR7A1P-202ENST00000641542 1158 ntBASIC5.67□□□□□ -1.5
COL28A1Q2UY09 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.67□□□□□ -1.5
COL28A1Q2UY09 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 SNORD51.1-201ENST00000365405 77 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AL356967.1-201ENST00000406305 431 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AL354868.1-201ENST00000417077 482 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AL034379.1-201ENST00000423216 253 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 GAPDHP23-201ENST00000444823 993 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 MTND6P5-201ENST00000448266 512 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 RN7SL57P-201ENST00000493687 290 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 NENFP3-201ENST00000503735 313 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC106806.2-201ENST00000509365 500 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 RNU6-889P-201ENST00000517189 103 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AL512310.9-201ENST00000553311 948 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AL671309.1-201ENST00000603750 544 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AL359513.1-201ENST00000614364 557 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 AC005840.5-201ENST00000619166 599 ntBASIC5.66□□□□□ -1.5
COL28A1Q2UY09 MIR6837-201ENST00000620884 64 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms