Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
MSX1P28360 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
MSX1P28360 OR10J3-201ENST00000332217 990 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
MSX1P28360 RNU6-462P-201ENST00000362659 105 ntBASIC7.04□□□□□ -1.28
MSX1P28360 SP140-202ENST00000373645 814 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
MSX1P28360 RPSAP44-201ENST00000406712 884 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 PIGFP2-201ENST00000421400 651 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC093107.1-201ENST00000422772 609 ntBASIC7.04□□□□□ -1.28
MSX1P28360 USP9YP36-201ENST00000424581 829 ntBASIC7.04□□□□□ -1.28
MSX1P28360 GPM6BP2-201ENST00000432046 144 ntBASIC7.04□□□□□ -1.28
MSX1P28360 FTH1P16-201ENST00000435241 552 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 GPM6BP1-201ENST00000446387 144 ntBASIC7.04□□□□□ -1.28
MSX1P28360 CEACAMP5-201ENST00000448037 961 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC079448.1-201ENST00000449377 373 ntBASIC7.04□□□□□ -1.28
MSX1P28360 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 AC004692.1-201ENST00000455430 424 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC016489.1-201ENST00000461109 375 ntBASIC7.04□□□□□ -1.28
MSX1P28360 ST13P14-201ENST00000474095 734 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 AC110792.2-201ENST00000510278 224 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC026700.1-201ENST00000512074 544 ntBASIC7.04□□□□□ -1.28
MSX1P28360 KCTD9P2-201ENST00000512203 1013 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC113352.1-201ENST00000513196 666 ntBASIC7.04□□□□□ -1.28
MSX1P28360 PSD2-AS1-201ENST00000515306 412 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 AP001189.2-201ENST00000527320 189 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC7.04□□□□□ -1.28
MSX1P28360 AC099524.1-206ENST00000568131 407 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 AC040162.2-201ENST00000573092 157 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC7.04□□□□□ -1.28
MSX1P28360 MIR3682-201ENST00000581338 84 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC7.04□□□□□ -1.28
MSX1P28360 MIR3159-201ENST00000584572 74 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC7.04□□□□□ -1.28
MSX1P28360 AC093074.1-201ENST00000590280 556 ntTSL 4 BASIC7.04□□□□□ -1.28
MSX1P28360 AC129492.5-201ENST00000603489 315 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC073389.2-201ENST00000606726 571 ntTSL 4 BASIC7.04□□□□□ -1.28
MSX1P28360 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC7.04□□□□□ -1.28
MSX1P28360 AC093788.1-201ENST00000609356 927 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC104010.1-201ENST00000616889 150 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AL603758.1-201ENST00000618654 241 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC005383.1-201ENST00000622689 534 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC007792.1-201ENST00000623023 402 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC110769.3-201ENST00000624567 1173 ntBASIC7.04□□□□□ -1.28
MSX1P28360 AC116563.2-201ENST00000624751 535 ntBASIC7.04□□□□□ -1.28
MSX1P28360 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
MSX1P28360 HPSE2-204ENST00000404542 3681 ntTSL 5 BASIC7.04□□□□□ -1.28
MSX1P28360 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC7.04□□□□□ -1.28
MSX1P28360 NUDT13-202ENST00000357321 2102 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
MSX1P28360 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.04□□□□□ -1.28
MSX1P28360 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 C15orf41-202ENST00000437989 2240 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 AC066616.2-201ENST00000559334 1481 ntBASIC7.04□□□□□ -1.28
MSX1P28360 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
MSX1P28360 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 RSRC2-201ENST00000331738 3520 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
MSX1P28360 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 GDI2P1-201ENST00000429312 1336 ntBASIC7.03□□□□□ -1.28
MSX1P28360 PSMC1P7-201ENST00000495689 1315 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AC012213.2-201ENST00000562917 4597 ntBASIC7.03□□□□□ -1.28
MSX1P28360 LDAH-209ENST00000440866 3728 ntTSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
MSX1P28360 CCDC62-203ENST00000392440 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 BDNF-213ENST00000525950 3829 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
MSX1P28360 YAF2-201ENST00000327791 4156 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 AC021242.1-201ENST00000507315 2035 ntBASIC7.03□□□□□ -1.28
MSX1P28360 LINC00960-202ENST00000492922 2126 ntTSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC7.03□□□□□ -1.28
MSX1P28360 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 PRLR-202ENST00000310101 1297 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
MSX1P28360 RNY3P3-201ENST00000363816 102 ntBASIC7.03□□□□□ -1.28
MSX1P28360 SNORA51.12-201ENST00000384448 134 ntBASIC7.03□□□□□ -1.28
MSX1P28360 U8.14-201ENST00000390843 143 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AL034403.1-201ENST00000399414 885 ntBASIC7.03□□□□□ -1.28
MSX1P28360 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC7.03□□□□□ -1.28
MSX1P28360 RPL12P10-201ENST00000413498 498 ntBASIC7.03□□□□□ -1.28
MSX1P28360 AC092042.2-201ENST00000417304 331 ntBASIC7.03□□□□□ -1.28
MSX1P28360 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC7.03□□□□□ -1.28
MSX1P28360 AL365400.1-201ENST00000431854 640 ntBASIC7.03□□□□□ -1.28
MSX1P28360 GAPDHP34-201ENST00000432112 823 ntBASIC7.03□□□□□ -1.28
MSX1P28360 BMS1P19-201ENST00000433925 393 ntBASIC7.03□□□□□ -1.28
MSX1P28360 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms